Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for Metabolomics analysis of multiple metabolic functions in the YjgF/YER057c/UK114 (Rid) protein family GC-MS (Part 1) (Study ST000117)

GCMS positive ion mode (Analysis AN000198)

Metabolite	Structure	F1	F2	F3
cysteine	ME681223	0.52	2.23	0.24
glutathione	ME681272	0.39	0.81	1.80
mannose-6-phosphate NIST	ME681268	0.41	1.05	1.54
glucose	ME681188	0.17	1.00	1.84
hexose NIST	ME681269	0.21	1.13	1.66
aspartic acid	ME681225	1.40	0.53	1.08
glutamine	ME681219	1.25	0.60	1.16
levoglucosan	ME681242	0.99	0.98	1.03
propane-1,3-diol NIST	ME681210	1.01	0.97	1.02
ornithine 4tms	ME681193	1.00	1.01	0.98
tyrosine	ME681189	1.01	0.99	1.00
UDP-glucuronic acid	ME681233	1.00	0.94	1.06
benzoic acid	ME681200	1.00	0.93	1.07
guanine	ME681254	0.99	0.94	1.07
phosphoethanolamine	ME681250	1.02	0.88	1.11
glycolic acid	ME681199	1.01	0.90	1.09
phosphate	ME681239	1.01	0.91	1.08
uridine-5^-monophosphate	ME681261	1.04	1.02	0.94
2^-deoxyguanosine	ME681281	1.07	1.03	0.90
fumaric acid	ME681274	1.10	1.01	0.90
xylulose NIST	ME681229	0.91	1.05	1.04
palmitoleic acid	ME681192	0.94	1.03	1.03
nicotinic acid	ME681265	0.94	1.05	1.01
phenylalanine	ME681212	0.93	1.06	1.01
inosine	ME681243	0.92	1.15	0.93
thymidine	ME681206	0.94	1.09	0.96
uracil	ME681231	0.92	1.11	0.97
succinic acid	ME681208	1.00	1.09	0.91
guanosine	ME681270	0.98	1.07	0.95
hypoxanthine	ME681244	1.00	1.05	0.95
adenosine-5-monophosphate	ME681201	0.98	1.05	0.97
hydroxylamine	ME681256	0.99	1.04	0.97
pentadecanoic acid	ME681252	0.80	0.98	1.22
lauric acid	ME681217	0.79	1.05	1.16
thymine	ME681234	0.77	1.04	1.19
myristic acid	ME681194	0.90	0.99	1.11
pyrophosphate	ME681237	0.93	1.00	1.07
cytidine-5-monophosphate	ME681276	0.84	1.03	1.13
glycerol-alpha-phosphate	ME681271	0.86	1.01	1.12
oxoproline	ME681240	0.86	1.02	1.12
alanine	ME681255	0.86	0.98	1.16
fructose	ME681220	0.82	1.01	1.17
glucose-1-phosphate	ME681273	0.80	1.16	1.04
glutamic acid	ME681246	0.72	1.14	1.14
2,5-dihydroxypyrazine NIST	ME681204	1.15	0.73	1.12
valine	ME681230	1.10	0.82	1.08
N-acetylgalactosamine	ME681267	0.93	0.78	1.29
stearic acid	ME681187	0.90	0.84	1.27
palmitic acid	ME681213	0.93	0.91	1.16
putrescine	ME681238	0.95	0.89	1.16
UDP-N-acetylglucosamine	ME681232	0.96	0.82	1.23
pelargonic acid	ME681191	0.96	0.85	1.20
proline	ME681211	0.96	0.85	1.19
oleic acid	ME681249	0.87	0.73	1.40
citric acid	ME681277	0.71	0.69	1.60
N-acetyl-L-ornithine	ME681266	0.80	0.69	1.51
spermidine	ME681236	0.63	1.10	1.27
hexose-6-phosphate	ME681251	0.58	0.98	1.44
fructose-6-phosphate	ME681257	0.62	0.97	1.41
glucose-6-phosphate	ME681247	0.62	0.96	1.42
cytosin	ME681221	0.78	0.89	1.33
heptadecanoic acid	ME681198	0.78	0.90	1.32
orotic acid	ME681214	0.70	0.96	1.34
fructose-1,6-bisphosphate	ME681275	0.73	1.00	1.26
fructose-1-phosphate	ME681248	0.75	0.95	1.30
thymidine-5-phosphate	ME681235	0.75	0.97	1.28
2-hydroxyglutaric acid	ME681228	1.68	0.96	0.35
2-hydroxyhexanoic acid	ME681280	1.52	1.12	0.36
2-isopropylmalic acid	ME681279	1.47	1.05	0.48
adenine	ME681203	1.21	0.89	0.90
adenosine	ME681202	1.23	0.93	0.84
alanine-alanine	ME681278	1.44	0.87	0.69
lactic acid	ME681196	1.36	0.98	0.66
nicotinamide	ME681241	1.26	1.02	0.72
3-phosphoglycerate	ME681227	0.90	1.43	0.66
glyceric acid	ME681245	1.08	1.41	0.51
tryptophan	ME681205	1.11	1.36	0.53
methionine	ME681215	1.07	1.34	0.59
serine	ME681190	1.04	1.32	0.64
urea	ME681259	1.07	1.54	0.39
inosine-5^-monophosphate	ME681260	1.01	1.51	0.48
phosphoenolpyruvate	ME681263	1.02	1.45	0.53
N-methylalanine	ME681253	1.11	1.13	0.76
beta-alanine	ME681224	1.17	1.22	0.61
isoleucine	ME681197	1.09	1.22	0.69
ribose-5-phosphate	ME681262	0.81	1.31	0.88
malic acid	ME681195	0.95	1.21	0.85
lysine	ME681216	0.94	1.17	0.89
threonine	ME681207	0.98	1.15	0.88
cholesterol	ME681258	0.91	1.31	0.78
ribose	ME681209	0.97	1.26	0.77
O-acetylserine	ME681264	0.90	1.86	0.23
alpha-ketoglutarate	ME681226	0.81	1.66	0.54
cysteine-glycine	ME681222	0.75	1.60	0.65
glycine	ME681218	0.69	1.67	0.64

Factors:

F1	genotype:single RidA knockout
F2	genotype:triple RidA knockout
F3	genotype:Wild Type

Data matrix