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MB Sample ID: SA080287
Local Sample ID: | NSiR1 |
Subject ID: | SU001220 |
Subject Type: | Plant |
Subject Species: | Phoenix dactylifera |
Taxonomy ID: | 42345 |
Select appropriate tab below to view additional metadata details:
Subject:
Subject ID: | SU001220 |
Subject Type: | Plant |
Subject Species: | Phoenix dactylifera |
Taxonomy ID: | 42345 |
Factors:
Local Sample ID | MB Sample ID | Factor Level ID | Level Value | Factor Name |
---|---|---|---|---|
NSiR1 | SA080287 | FL012299 | NaCl-Root-Si | Treatment |
Collection:
Collection ID: | CO001214 |
Collection Summary: | Leaf and root tissues were collected from date palm seedlings after treatment with NaCl and/or silicon, flash frozen with liquid nitrogen, and freeze dried. |
Sample Type: | Plant |
Treatment:
Treatment ID: | TR001235 |
Treatment Summary: | Once the radicle of the seeds had emerged, they were then transferred to potting compost and maintained at 32C/30C with a photoperiod of 16/8 h in the growth chamber. The seedlings were then divided into four sets based on their treatments and were irrigated either with tap water with an electrical conductivity of 50 mS/m, considered as a control treatment (control), 300 mM NaCl without additional silicon for salt stress (NaCl), 5 mM Na2SiO3 (+Si) for silicon treatment or 5 mM of sodium silicate (Na2SiO3) along with 300 mM NaCl (NaCl+Si) for salt stress and silicon treatment. The NaCl and silicon treatments were administered on a weekly basis, as irrigation. |
Sample Preparation:
Sampleprep ID: | SP001228 |
Sampleprep Summary: | A total of 24 samples were analyzed using LC-MS by HILIC chromatography on a 0.5 x 150 mm Zic-pHILIC column using 10 mM NH4HCO3 in water (A) and 10 mM NH4HCO3 in 95% acetonitrile (B) as solvents and by RPLC chromatography using the same solvents and a 0.5 x 100 mm PLRPS column. The Samples were extracted at a tissue concentration of 100 mg/mL (leaves) or 50 mg/mL (roots) in 80% methanol by vortexing for 10 minutes. The solids were collected by centrifugation, and then the supernatant was filtered through a 0.8 μm spin filter. Samples were injected onto the LC-MS and data was acquired in polarity switching mode with data dependent acquisition of MS/MS spectra. |
Combined analysis:
Analysis ID | AN001911 | AN001912 |
---|---|---|
Analysis type | MS | MS |
Chromatography type | HILIC | Reversed phase |
Chromatography system | Thermo Q-Exactive | Thermo Q-Exactive |
Column | Zic-pHILIC 0.5 x 150 mm | 0.5 x 100 mm PLRPS column |
MS Type | ESI | ESI |
MS instrument type | Orbitrap | Orbitrap |
MS instrument name | Thermo Q Exactive Orbitrap | Thermo Q Exactive Orbitrap |
Ion Mode | UNSPECIFIED | UNSPECIFIED |
Units | log10(peak area) | log10(peak area) |
Chromatography:
Chromatography ID: | CH001384 |
Instrument Name: | Thermo Q-Exactive |
Column Name: | Zic-pHILIC 0.5 x 150 mm |
Chromatography Type: | HILIC |
Chromatography ID: | CH001385 |
Instrument Name: | Thermo Q-Exactive |
Column Name: | 0.5 x 100 mm PLRPS column |
Chromatography Type: | Reversed phase |
MS:
MS ID: | MS001767 |
Analysis ID: | AN001911 |
Instrument Name: | Thermo Q Exactive Orbitrap |
Instrument Type: | Orbitrap |
MS Type: | ESI |
MS Comments: | Samples were injected onto the LC-MS and data was acquired in polarity switching mode with data dependent acquisition of MS/MS spectra. The ion mode is polarity-switching, which means it scans in positive and negative ion mode during the sample run, switching between the two modes about every 20 milliseconds. |
Ion Mode: | UNSPECIFIED |
MS ID: | MS001768 |
Analysis ID: | AN001912 |
Instrument Name: | Thermo Q Exactive Orbitrap |
Instrument Type: | Orbitrap |
MS Type: | ESI |
MS Comments: | Samples were injected onto the LC-MS and data was acquired in polarity switching mode with data dependent acquisition of MS/MS spectra. The ion mode is polarity-switching, which means it scans in positive and negative ion mode during the sample run, switching between the two modes about every 20 milliseconds. |
Ion Mode: | UNSPECIFIED |