Study-specific Protocols

These protocols have been submitted in association with experimental studies and projects. Browse and sort the full list of protocols, or use the form to search by keyword or phrase.

Click the File ID to access protocol details, including a list of studies that use that protocol and, for studies that have been released, an option to download the protocol.
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Fields searched: Analysis, Metabolite Class, Sample Type, Process, Institute, Comments (case insensitive)
File ID
Analysis
Metabolite Class
Sample Type
Process
Institute
181NMR/MS Human A549 cells Sample prep/MS/NMR University of Kentucky
165NMR/MS Human A549 cells Sample treatment/MS/NMR University of Kentucky
166NMR/MS Human A549 cells Sample collection/MS/NMR University of Kentucky
180NMR/MS Human A549 cells Sample prep/MS/NMR University of Kentucky
179NMR/MS Human A549 cells Sample prep/MS/NMR University of Kentucky
450MS Human AML cell lines Treatment University of Florida
451MS Human AML cell lines Collection University of Florida
484MS Mouse Antrum, corpus glands Treatment University of California, Davis
611MS Human Astrocytes Sample prep University of Michigan
827MS - Bacterial cells Collection Arizona State University
829MS Staphylococcus epidermidis Bacterial cells Collection Arizona State University
615MS Mouse Bile acids Sample prep University of Michigan
348MS Amino Acids Biological fluids/tissue Sample prep Sanford Burnham Medical Research Institute
349MS Acyl carnitines Biological fluids/tissue Sample prep Sanford Burnham Medical Research Institute
350MS Organic Acids Biological fluids/tissue Sample prep Sanford Burnham Medical Research Institute
274NMR/MS Human Blood Sample prep/MS Mayo Clinic
795NMR Human Blood Sample prep University of Michigan
708MS Elephant seal Blood Collection University of California Davis
559MS Human Blood Collection University of Florida
794NMR Human Blood Sample prep University of Michigan
504MS Human Blood Treatment University of California, Davis
594NMR Mouse Blood Collection University of Michigan
787MS Rat Blood Sample prep Baylor College of Medicine
505MS Human Blood Treatment University of California, Davis
800NMR Human Blood Sample prep University of Michigan
242MS Human Blood Sample prep/MS University of Florida
643NMR Horse Blood Sample prep French National Institute for Agricultural Research (INRA)
639MS Human Blood Collection University of California, Davis
790MS Human Blood MS Emory University
595NMR Mouse Blood Collection University of Michigan
801NMR Human Blood Sample prep University of Michigan
788MS Rat Blood Sample prep Baylor College of Medicine
647MS Human Blood Collection University of Kentucky
740MS Human Blood Sample prep University of California, Davis
796NMR Human Blood Sample prep University of Michigan
560MS Human Blood Treatment University of Florida
709MS Elephant seal Blood Collection University of California Davis
491MS Rat Blood collected by heart puncture Treatment University of California, Davis
625MS - Blood (plasma) Analysis University of Michigan
551MS Human Blood (plasma) Collection University of California, Davis
347MS Broad spectrum Blood (plasma) Protein precipitation University of Florida
346MS Lipids Blood (plasma) Matyash Extraction and RPLC-MS University of Florida
665MS Human Blood (plasma) Analysis University of Michigan
453MS Mouse Blood (plasma) - -
626MS - Blood (plasma) Analysis University of Michigan
588MS Macaca mulatta Blood (plasma) analysis Emory University
102MS Human Blood (plasma) Analysis/LC-MS University of Michigan
163MS Mouse Blood (plasma) Sample prep/MS University of California, Davis
629MS - Blood (plasma) Analysis University of Michigan
397MS Horse metabolites Blood (plasma) Treatment University of Florida
657MS Megalobrama amblycephala Blood (plasma) Treatment Huazhong Agricultural University
730MS Cow, mouse, human Blood (plasma) Analysis University of Florida
19MS Rat Amino acids and other small molecules Blood (plasma) Sample prep/LC-MS University of Michigan
659MS Human Blood (plasma) Sample prep University of California, Davis
735MS Human Blood (plasma) Sample prep UC Davis
608MS Human Blood (plasma) Analysis University of Michigan
472MS Cow Blood (plasma) Sample prep UCDavis
760MS Human Blood (plasma) Sample prep Emory University
471MS Cow Blood (plasma) Treatment UCDavis
96MS Human Blood (plasma) Sample prep/LC-MS University of Michigan
610MS Human Blood (plasma) Analysis University of Michigan
120MS Mouse Blood (plasma) Sample prep/MS University of California, Davis
423MS Rat Blood (plasma) and lung Chromatography University of California Davis
741MS Mouse Blood (plasma), Feces Collection Johns Hopkins University School of Medicine
746MS Mouse Blood (plasma), Feces Sample prep Johns Hopkins University School of Medicine
744MS Mouse Blood (plasma), Feces Treatment/MS Johns Hopkins University School of Medicine
429MS Mouse Blood (plasma), liver, hypothalmus, muscle, adipose Treatment UC Davis
231MS Human Blood (serum) Sample prep/MS University of California, Davis
670NMR Human Blood (serum) Sample prep Giotto Biotech s.r.l.
41NMR Amino acids and other small molecules Blood (serum) Sample prep/NMR RTI International
241MS Human Blood (serum) Sample prep/MS University of Florida
669NMR Human Blood (serum) Sample prep Giotto Biotech s.r.l.
683MS Human Blood (serum) Sample prep University of Michigan
621MS Human Blood (serum) Sample prep Vanderbilt University Medical Center
271MS Human Blood (serum) Sample prep/MS University of Michigan
479MS Mouse Blood (serum) Sample prep UCDavis
638MS Human Blood (serum) Analysis/LC-MS University of California, Davis
550MS Human Blood (serum) Collection University of California, Davis
747MS Human Blood (serum) Sample prep Emory University
176MS Human Blood (serum) Sample prep/MS University of California, Davis
480MS Mouse Blood (serum) Treatment UCDavis
671NMR Human Blood (serum) Sample prep Giotto Biotech s.r.l.
710MS Human Blood (serum) Sample prep University of Michigan
644MS Human Blood (serum) Sample prep University of Michigan
44NMR Amino acids and other small molecules Blood (serum) Sample prep/NMR RTI International
46NMR Amino acids and other small molecules Blood (serum) Sample prep/NMR RTI International
227MS Mouse Blood (serum), adipose, heart, muscle and liver Sample prep/MS University of California, Davis
723MS Human Blood (serum) and liver Chromatography Mayo Clinic
386MS Rat, human Blood (serum) and urine Sample prep Beijing Institute of Radiation Medicine
385MS Rat, human Blood (serum) and urine Collection Beijing Institute of Radiation Medicine
86NMR Human Blood (serum) fetal cord Sample prep/NMR RTI International
574MS Macaca mulatta Blood (whole) Sample prep Emory University
581MS Macaca mulatta Blood (whole) Chromatography Emory University
273MS Mouse Bone marrow cells Sample prep/MS New York University
537MS Mouse Bone marrow macrophages Collection University of California, Davis
789MS Mouse Brain Sample prep Vanderbilt University
384MS Rat Brain Sample prep University of Florida
381MS Rat Brain Chromatography University of Florida
555MS Rat Brain Sample prep University of Florida
737NMR Human Breast cancer cell line (MDA231) Sample prep University of Kentucky
738NMR Human Breast cancer cell line (MDA231) Sample prep University of Kentucky
736NMR Human Breast cancer cell line (MDA231) Collection University of Kentucky
109MS Human Breast cancer cells Analysis/LC-MS University of Michigan
641NMR Human Breast cancer cells Sample prep University of Kentucky
640NMR Human Breast cancer cells Sample prep University of Kentucky
108MS Human Breast cancer cells Sample prep/LC-MS University of Michigan
122MS Human Breast cells Sample prep/MS University of California, Davis
116MS Human Breast normal/cancer cells Sample prep/LC-MS RTI International
489MS Human Bronchoalveolar lavage supernatant Treatment University of California, Davis
42NMR Amino acids and other small molecules Cecum Sample prep/NMR RTI International
48NMR Amino acids and other small molecules Cecum Sample prep/NMR RTI International
39NMR Amino acids and other small molecules Cecum Sample prep/NMR RTI International
763NMR Mouse Cecum Sample prep The Pennsylvania State University
728MS Mouse Cecum Analysis UC Davis
36NMR Amino acids and other small molecules Cecum Sample prep/NMR RTI International
666MS Mouse Cecum Sample prep The Pennsylvania State University (Penn State)
439MS Human, chicken Cecum, fecal bile acids Analysis University of Michigan
251MS Human Cell culture Collection University of Kentucky
254MS Human Cell culture Sample prep/MS University of Kentucky
138MS Human Cell culture Sample prep/GCTOF-MS University of California, Davis
252MS Human Cell culture Treatment University of Kentucky
422MS Staphylococcus aureus Cells Chromatography University of Florida
245MS Human Cells Sample prep/MS University of Florida
16MS Human Cells Sample prep/LC-MS University of Michigan
419MS Staphylococcus aureus Cells Collection University of Florida
455MS Synechococcus elongatus (PCC 7942) Cells Treatment UCDavis
263MS Human Cells Sample prep/MS University of Michigan
724MS Candida albicans Cells Analysis University of Florida
632MS Synechococcus elongatus (PCC 7942) Cells Collection University of California, Davis
352MS Lipids Cells Folch Extraction University of Florida
631MS Human Cells Treatment University of California, Davis
420MS Staphylococcus aureus Cells Treatment University of Florida
637MS Synechococcus elongatus (PCC 7942) Cells Sample prep University of California, Davis
634MS E.coli Cells Collection University of California, Davis
421MS Staphylococcus aureus Cells Chromatography University of Florida
454MS Bacteria Cells Treatment UCDavis
503MS Human Cells Sample prep University of California, Davis
438MS Mouse, human Cells, skeletal muscles, Lung Fibroblasts, plasma Analysis University of Michigan
135MS Human Cerebrospinal fluid Sample prep/MS University of California, Davis
668MS Mouse Cultured cells Sample prep Univ. of Alabama at Birmingham
819MS Human Cultured cells Sample prep University of Michigan
762MS Human Cultured cells Analysis Eberhard-Karls-University Tuebingen, Institute of Pharmaceutical Sciences
654MS Auxenochlorella protothecoides cells Cultured cells Treatment University of California, Davis
757MS Marine Plankton Cultured cells Analysis University of Washington
682MS Mouse Cultured cells Treatment University of Colorado Anschutz Medical Center
681MS Mouse Cultured cells Treatment University of Colorado Anschutz Medical Center
655MS Auxenochlorella protothecoides cells Cultured cells Sample prep University of California, Davis
761MS Human Cultured cells Sample prep Eberhard-Karls-University Tuebingen, Institute of Pharmaceutical Sciences
755MS Marine Plankton Cultured cells Sample prep/MS University of Washington
674MS Human Cultured cells Treatment Pennsylvania State University
656MS Auxenochlorella protothecoides cells Cultured cells Treatment University of California, Davis
583MS Mouse Cultured primary cells Chromatography University of Florida
636MS Mouse Cytosol, mitochondria Treatment University of California, Davis
774MS - E.Coli isolates MS Vanderbilt University
667MS Xenopus Laevis Embryo cells Sample prep University of Maryland, College Park
519NMR Cat Exhaled breath condensate and bronchoalveolar lavage fluid Sample prep University of Missouri-Columbia
130MS Human Fat Tissue Sample prep/MS University of California, Davis
833MS Bacteria Feces Sample prep Helmholtz Centre for Environmental Research - UFZ
779MS Mouse Feces Sample prep University of Michigan
306MS Human Feces Analysis University of Michigan
793MS Human Feces Sample prep/MS Pennsylvania state university
835MS Bacteria Feces Analysis Helmholtz Centre for Environmental Research - UFZ
834MS Bacteria Feces Chromatography Helmholtz Centre for Environmental Research - UFZ
119NMR Mouse Feces Sample prep/NMR RTI International
162MS Mouse Feces Sample prep/MS RTI International
765MS Human Feces, Serum, Colon Sample prep University of Michigan
766MS Human Feces, Serum, Colon Sample prep University of Michigan
118MS Mouse FLT3-TID/MLL-ENL mice myeloid cells Sample prep/MS RTI International
558MS Drosophila Fly brain tissue Sample prep University of Michigan
557MS Drosophila Fly brain tissue Chromatography University of Michigan
803MS Apple and orange juice Fruit juice Collection China Agricultural University
534MS Mouse Glioma cell lines and tumor tissue Sample prep University of Michigan
685MS Drosophila Head and Body Tissue Sample prep University of California, Davis
275MS Rat Hepatocytes Treatment Mayo Clinic
802MS Human HepG cultured cells Collection Beatson Institute for Cancer Research
807MS Human HepG cultured cells Sample prep University of Georgia
482MS Mouse Hind brain tissue Chromatography University at Buffalo
483MS Mouse Hind brain tissue Collection University at Buffalo
552MS Human HL-60 cells Sample prep University of Florida
589MS Mouse Hypothalamus Sample prep University of California Davis
590MS Mouse Hypothalamus Sample prep University of California Davis
35MS Amino acids and other small molecules Insect larvae Sample prep/MS RTI International
531MS Rat Intestinal lipid Sample prep University of Michigan
622MS Mouse Kidney tissue Sample prep University of California, Davis
748MS C.elegans Liquid cultures of synchronized worms Analysis University of Georgia
754MS C.elegans Liquid cultures of synchronized worms Analysis University of Georgia
753MS C.elegans Liquid cultures of synchronized worms Analysis University of Georgia
749MS C.elegans Liquid cultures of synchronized worms Collection University of Georgia
750MS C.elegans Liquid cultures of synchronized worms Sample prep University of Georgia
66NMR Amino acids and other small molecules Liver Sample prep/NMR RTI International
546MS Human Liver Analysis University of California, Davis
452MS Human Liver Chromatography University of Florida
43NMR Amino acids and other small molecules Liver Sample prep/NMR RTI International
704MS Mouse Liver Chromatography University of California Davis
705MS Mouse Liver Sample prep University of California Davis
599MS Mouse Liver Sample prep University of California, Davis
40NMR Amino acids and other small molecules Liver Sample prep/NMR RTI International
785MS Rat Liver Sample prep Baylor College of Medicine
49NMR Amino acids and other small molecules Liver Sample prep/NMR RTI International
786MS Rat Liver Sample prep Baylor College of Medicine
37NMR Amino acids and other small molecules Liver Sample prep/NMR RTI International
320MS Mouse Liver and Blood (plasma) Analysis University of Michigan
379MS Mouse Liver and Blood (serum) Sample prep Penn State University
481MS Mouse Liver and bone marrow Collection University of Florida
238MS Mouse Liver, small and large intestine, and feces Sample prep/MS Pennsylvania State University
157MS Mouse Lung Sample prep/MS RTI International
548MS Human Lung Sample prep UCDavis
613MS Human Lung Sample prep University of Michigan
437MS Mouse, human Lung Fiboblasts Analysis University of Michigan
739MS Mouse lung tissue and Blood (serum) Analysis Harvard T.H. Chan School of Public Health
721MS Maize Maize starchy endosperm Analysis University of Florida
88NMR Mayfly Mayfly larvae Sample prep/NMR RTI International
715MS Human Media collection from plate Treatment/MS University of Kentucky
718MS Human Media collection from plate Sample prep/MS University of Kentucky
716MS Human Media collection from plate Collection/MS University of Kentucky
714MS Human Media collection from plate Sample prep/MS University of Kentucky
443MS Mouse, rat Mouse (Epididymal white adipose tissue, liver, Inguinal white adipose tissue , Blood (plasma) ) Rat (Tissues) Analysis University of Michigan
727MS Mouse, human Mouse (muscle tissue), Human (Liver) Analysis University of Florida
441MS Mouse, human Mouse stool samples, human blood Analysis University of Michigan
703MS Human Ovarian cancer cells Sample prep University of California Davis
190MS Human Ovarian cancer cells Analysis University of California Davis
192MS Human Ovarian cancer cells Sample prep University of California Davis
191MS Human Ovarian cancer cells Analysis University of California Davis
193MS Human Ovarian cancer cells Sample prep University of California Davis
160MS Macaca fascicularis Ovarian samples Sample prep/MS RTI International
156MS Macaca fascicularis Ovary tissue Sample prep/MS RTI International
651MS Mouse Pancreatic Islets Collection University of California, San Diego
467MS Arabidopsis thaliana Plant cells Chromatography UCDavis
633MS Chlorella minutissima Plant cells Treatment University of California, Davis
457MS Arabidopsis thaliana Plant cells Sample prep UCDavis
456MS Arabidopsis thaliana Plant cells Treatment UCDavis
784MS Human Platelets Sample prep University of Michigan; University of Mississippi; University of Minnesota
474MS Mouse prostate Treatment UCDavis
239NMR Human Prostrate cells Sample prep/NMR Purdue University North Central
498MS - Protein extraction and quantification Sample prep University of Kentucky
678NMR Mouse Quadriceps Muscle Analysis North-West University
675MS Mouse Quadriceps Muscle Sample prep North-West University
676MS Mouse Quadriceps Muscle Sample prep North-West University
476MS Dog Rectum Treatment UCDavis
493MS Human Renal tissue Treatment University of California, Davis
492MS Human Renal tissue Sample prep University of California, Davis
618MS Rat Retinal tissue Sample prep University of Michigan
684MS Mouse Retinal tissue Sample prep University of Miami
650MS Rat Retinal tissue and optic nerves Sample prep Bascom Palmer Eye Insitute, University of Miami
614MS Mouse Retina tissue and Blood (plasma) Sample prep University of Michigan
497MS - Retsch homogenization Collection University of Kentucky
182MS Human Scalp biopsies Sample prep/MS Case Western Reserve University
490MS Cricetinae Serum free from the DG44 CHO cell line Treatment University of California, Davis
473MS Mouse Small intestine Treatment UCDavis
810MS Human Stem cells Analysis University of Calgary
725MS Streptococcus mutans, mouse Streptococcus mutans cells,mouse muscle Analysis University of Florida
821MS Natural mixed marine microbial community Suspended Marine Particulate Matter Analysis University of Washington
209NMR Synthetic metabolites Synthetic metabolites mixture Sample prep/NMR University of Florida
269MS Human Tissue Sample prep/MS University of Michigan
153MS Mouse Tissue Sample prep/MS RTI International
501MS Mouse Tissue Sample prep University of Michigan
495MS Human Tissue slices Collection University of Kentucky
494MS Human Tissue slices Treatment University of Kentucky
496MS Human Tissue slices Sample prep University of Kentucky
440MS Human Tissue with different psoriasis status Analysis University of Michigan
428MS Human Umbilical cord plasma Collection UC Davis
154MS Mouse Urine Sample prep/HILIC-MS RTI International
47NMR Mouse Amino acids and other small molecules Urine Sample prep/NMR RTI International
475MS Human Urine Treatment UCDavis
28NMR Human Urine Sample prep/NMR RTI International
32NMR Human Urine Sample prep/NMR RTI International
38NMR Mouse Amino acids and other small molecules Urine Sample prep/NMR RTI International
731MS Human Urine and Blood (plasma) Analysis University of Florida
87NMR Human Urine (infant frozen urine) Sample prep/NMR RTI International
604MS - Various Sample prep University of Michigan
711NMR Drosophila Whole Bodies Collection University of Florida
713NMR Drosophila Whole Bodies Collection University of Florida
712NMR Drosophila Whole Bodies Collection University of Florida
719MS Sarcophaga crassipalpis Whole fly Analysis University of Florida
649MS Insect Aphaenogaster picea Whole tissue Sample prep University of Florida
648MS Insect Aphaenogaster picea Whole tissue Sample prep University of Florida
733MS C.elegans Worm pellets Collection University of Florida
201MS C.elegans Worm pellets Collection University of Florida
95NMR C. elegans Worm serum Analysis/NMR University of Florida
24NMR C. elegans Worm serum Sample prep/NMR University of Florida
247MS Maize Zea mays Sample prep/MS University of Florida
248MS Maize Zea mays Sample prep/MS University of Florida
722MS Maize, C. transvaalensis Zea mays (Maize kernel), C. transvaalensis (Plant root tissue) Analysis University of Florida

Number of records: 283

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