Return to study ST002135 main page
MB Sample ID: SA205209
Local Sample ID: | CB_VP_ARMII_080 |
Subject ID: | SU002220 |
Subject Type: | Human |
Subject Species: | Homo sapiens |
Taxonomy ID: | 9606 |
Select appropriate tab below to view additional metadata details:
Subject:
Subject ID: | SU002220 |
Subject Type: | Human |
Subject Species: | Homo sapiens |
Taxonomy ID: | 9606 |
Factors:
Local Sample ID | MB Sample ID | Factor Level ID | Level Value | Factor Name |
---|---|---|---|---|
CB_VP_ARMII_080 | SA205209 | FL025171 | Umbilical cord blood | SampleType |
CB_VP_ARMII_080 | SA205209 | FL025171 | 2 | BATCH |
CB_VP_ARMII_080 | SA205209 | FL025171 | 3 | LIPIDOMICS_BATCH |
Collection:
Collection ID: | CO002213 |
Collection Summary: | Standard blood plasma collection protocol |
Sample Type: | Blood (plasma) |
Treatment:
Treatment ID: | TR002232 |
Treatment Summary: | This is observational study |
Sample Preparation:
Sampleprep ID: | SP002226 |
Sampleprep Summary: | Standard MRC2 untargeted metabolomics and lipidomics sample preparation protocols |
Sampleprep Protocol Filename: | araskind_20210615_101412_PR_SP_A004_Shotgun_Lipidomics.PDF araskind_20210611_105341_PR_SP_Untargeted_metabolomics_analysis.DOC |
Combined analysis:
Analysis ID | AN003493 | AN003494 | AN003495 | AN003496 |
---|---|---|---|---|
Analysis type | MS | MS | MS | MS |
Chromatography type | Reversed phase | Reversed phase | Reversed phase | Reversed phase |
Chromatography system | Agilent 1290 Infinity II | Agilent 1290 Infinity II | Shimadzu Prominence UFLC | Shimadzu Prominence UFLC |
Column | Waters Acquity BEH HSS T3 (100 x 2.1mm,1.8um) | Waters Acquity BEH HSS T3 (100 x 2.1mm,1.8um) | Waters Acquity BEH HSS T3 (100 x 2.1mm,1.8um) | Waters Acquity BEH HSS T3 (100 x 2.1mm,1.8um) |
MS Type | ESI | ESI | ESI | ESI |
MS instrument type | QTOF | QTOF | Triple TOF | Triple TOF |
MS instrument name | Agilent 6545 QTOF | Agilent 6545 QTOF | ABI Sciex 5600+ TripleTOF | ABI Sciex 5600+ TripleTOF |
Ion Mode | NEGATIVE | POSITIVE | NEGATIVE | POSITIVE |
Units | Peak area | Peak area | Peak area, normalized | Peak area, normalized |
Chromatography:
Chromatography ID: | CH002579 |
Chromatography Summary: | Untargeted reverse phase negative mode |
Instrument Name: | Agilent 1290 Infinity II |
Column Name: | Waters Acquity BEH HSS T3 (100 x 2.1mm,1.8um) |
Chromatography Type: | Reversed phase |
Chromatography ID: | CH002580 |
Chromatography Summary: | Untargeted reverse phase positive mode |
Instrument Name: | Agilent 1290 Infinity II |
Column Name: | Waters Acquity BEH HSS T3 (100 x 2.1mm,1.8um) |
Chromatography Type: | Reversed phase |
Chromatography ID: | CH002581 |
Chromatography Summary: | Lipidomics reverse phase negative mode |
Instrument Name: | Shimadzu Prominence UFLC |
Column Name: | Waters Acquity BEH HSS T3 (100 x 2.1mm,1.8um) |
Chromatography Type: | Reversed phase |
Chromatography ID: | CH002582 |
Chromatography Summary: | Lipidomics reverse phase positive mode |
Instrument Name: | Shimadzu Prominence UFLC |
Column Name: | Waters Acquity BEH HSS T3 (100 x 2.1mm,1.8um) |
Chromatography Type: | Reversed phase |
MS:
MS ID: | MS003253 |
Analysis ID: | AN003493 |
Instrument Name: | Agilent 6545 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
MS Comments: | Acquisition method RP Neg Untargeted_2016_460ulmin_Agilent.m, Processing in Agilent Qual/MPP followed by in-house scripts |
Ion Mode: | NEGATIVE |
MS ID: | MS003254 |
Analysis ID: | AN003494 |
Instrument Name: | Agilent 6545 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
MS Comments: | Acquisition method: RP Pos Untargeted_2016_Agilent_460ulmin_2mm.m, Processing in Agilent Qual/MPP followed by in-house scripts |
Ion Mode: | POSITIVE |
MS ID: | MS003255 |
Analysis ID: | AN003495 |
Instrument Name: | ABI Sciex 5600+ TripleTOF |
Instrument Type: | Triple TOF |
MS Type: | ESI |
MS Comments: | Acquisition method LIP_15min_MSMS_Jenny_New_20min_Negative.dam, Processing in Sciex proprietary software followed by in-house scripts |
Ion Mode: | NEGATIVE |
MS ID: | MS003256 |
Analysis ID: | AN003496 |
Instrument Name: | ABI Sciex 5600+ TripleTOF |
Instrument Type: | Triple TOF |
MS Type: | ESI |
MS Comments: | Acquisition method LIP_15min_MSMS_Jenny_new_20min_Positive.dam, Processing in Sciex proprietary software followed by in-house scripts |
Ion Mode: | POSITIVE |