Summary of Study ST000542
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000397. The data can be accessed directly via it's Project DOI: 10.21228/M8R013 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST000542 |
| Study Title | Triple Quadrupole Mass Spectrometer to measure low abundance isotope enrichment in individual muscle proteins |
| Study Type | isotope encrichment and comparison of mass spectrometer platforms, timecourse |
| Study Summary | Stable isotope-labeled amino acids have long been used to measure the fractional synthesis rate of proteins, although the mass spectrometry platforms used for such analyses have changed throughout the years. More recently, tandem mass spectrometers such as triple quadrupoles have been accepted as the standard platform for enrichment measurement due to their sensitivity and the enhanced specificity offered by multiple reaction monitoring (MRM) experiments. The limit in the utility of such platforms for enrichment analysis occurs when measuring very low levels of enrichment from small amounts of sample, particularly proteins isolated from two-dimensional gel electrophoresis (2D-GE), where interference from contaminant ions impact the sensitivity of the measurement. We therefore applied a high resolution orbitrap mass spectrometer to the analysis of [ring-13C6]-phenylalanine enrichment in individual muscle proteins isolated with 2D-GE. Comparison of samples analyzed on both platforms revealed that the high resolution MS has significantly improved sensitivity relative to the triple quadrupole MS at very low-level enrichments due to its ability to resolve interferences in the m/z dimension. |
| Institute | Mayo Clinic |
| Department | Endocrinology |
| Laboratory | Mayo Clinic Metabolomics Resource Core |
| Last Name | Nair |
| First Name | Sreekumaran |
| Address | 200 First Street SW, Rochester, MN 55905 |
| Nair.K@mayo.edu | |
| Phone | 507-285-2415 |
| Submit Date | 2016-04-11 |
| Analysis Type Detail | LC-MS |
| Release Date | 2017-07-10 |
| Release Version | 1 |
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Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | group | time (mins) |
|---|---|---|---|
| SA028019 | 7A-180 | A | 180 |
| SA028020 | 18A-180 | A | 180 |
| SA028021 | 16A-180 | A | 180 |
| SA028022 | 1A-180 | A | 180 |
| SA028023 | 14A-180 | A | 180 |
| SA028024 | 3A-180 | A | 180 |
| SA028025 | 8A-180 | A | 180 |
| SA028026 | 5A-180 | A | 180 |
| SA028027 | 19A-180 | A | 180 |
| SA028028 | 2A-180 | A | 180 |
| SA028029 | 16A-480 | A | 480 |
| SA028030 | 1A-480 | A | 480 |
| SA028031 | 2A-480 | A | 480 |
| SA028032 | 7A-480 | A | 480 |
| SA028033 | 8A-480 | A | 480 |
| SA028034 | 19A-480 | A | 480 |
| SA028035 | 18A-480 | A | 480 |
| SA028036 | 3A-480 | A | 480 |
| SA028037 | 14A-480 | A | 480 |
| SA028038 | 5A-480 | A | 480 |
| SA028039 | 18B-180 | B | 180 |
| SA028040 | 14B-180 | B | 180 |
| SA028041 | 19B-180 | B | 180 |
| SA028042 | 16B-180 | B | 180 |
| SA028043 | 8B-180 | B | 180 |
| SA028044 | 2B-180 | B | 180 |
| SA028045 | 5B-180 | B | 180 |
| SA028046 | 7B-180 | B | 180 |
| SA028047 | 3B-180 | B | 180 |
| SA028048 | 1B-180 | B | 180 |
| SA028049 | 2B-480 | B | 480 |
| SA028050 | 18B-480 | B | 480 |
| SA028051 | 3B-480 | B | 480 |
| SA028052 | 8B-480 | B | 480 |
| SA028053 | 16B-480 | B | 480 |
| SA028054 | 14B-480 | B | 480 |
| SA028055 | 1B-480 | B | 480 |
| SA028056 | 7B-480 | B | 480 |
| SA028057 | 5B-480 | B | 480 |
| SA028058 | 19B-480 | B | 480 |
| SA028059 | 16C-180 | C | 180 |
| SA028060 | 14C-180 | C | 180 |
| SA028061 | 16C-480 | C | 480 |
| SA028062 | 14C-480 | C | 480 |
| Showing results 1 to 44 of 44 |
