Summary of Study ST001298
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000879. The data can be accessed directly via it's Project DOI: 10.21228/M82M47 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST001298 |
Study Title | Metabolome Profiling of Synechococcus elongatus PCC 11801 strains engineered for Succinate Production |
Study Type | Measurement of relative metabolite pools of wild type and engineered Synechococcus elongatus PCC 11801 strains using Isotopic Ratio Method |
Study Summary | Experiments to measure relative metabolite pools of wild type Synechococcus elongatus PCC 11801 and its recombinants producing succinate. The wild type and the engineered strains producing succinate were cultivated at 1% CO2 and their metabolome data was collected in three biological and three technical replicates (n=9). The study aims to find metabolomics changes between the wild type and the engineered to identify potential rate-limiting steps that be used as targets for improved production. |
Institute | Indian Institute of Technology Bombay |
Department | Department of Chemical Engineering |
Laboratory | Bio systems Engineering Lab |
Last Name | Wangikar |
First Name | Pramod P |
Address | Department of Chemical Engineering, IIT Bombay, Powai, Mumbai, Maharashtra, India - 400076 |
wangikar@iitb.ac.in | |
Phone | 22254215 |
Submit Date | 2020-01-03 |
Raw Data Available | Yes |
Raw Data File Type(s) | wiff |
Analysis Type Detail | LC-MS |
Release Date | 2020-07-05 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Bacteria; Subject species: Synechococcus elongatus PCC 11801 (Factor headings shown in green)
mb_sample_id | local_sample_id | Genotype |
---|---|---|
SA094196 | SA3 BR3-1 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR |
SA094197 | SA3 BR3-3 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR |
SA094198 | SA3 BR2-3 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR |
SA094199 | SA3 BR3-2 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR |
SA094200 | SA3 BR2-2 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR |
SA094201 | SA3 BR2-1 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR |
SA094202 | SA3 BR1-2 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR |
SA094203 | SA3 BR1-1 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR |
SA094204 | SA3 BR1-3 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR |
SA094205 | SA7 BR2-1 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR , DDOP62_03790 Prbcl400 gltA Prbcl400 SBPase/FBPase KanR |
SA094206 | SA7 BR1-1 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR , DDOP62_03790 Prbcl400 gltA Prbcl400 SBPase/FBPase KanR |
SA094207 | SA7 BR1-2 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR , DDOP62_03790 Prbcl400 gltA Prbcl400 SBPase/FBPase KanR |
SA094208 | SA7 BR2-2 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR , DDOP62_03790 Prbcl400 gltA Prbcl400 SBPase/FBPase KanR |
SA094209 | SA7 BR3-2 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR , DDOP62_03790 Prbcl400 gltA Prbcl400 SBPase/FBPase KanR |
SA094210 | SA7 BR3-3 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR , DDOP62_03790 Prbcl400 gltA Prbcl400 SBPase/FBPase KanR |
SA094211 | SA7 BR2-3 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR , DDOP62_03790 Prbcl400 gltA Prbcl400 SBPase/FBPase KanR |
SA094212 | SA7 BR1-3 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR , DDOP62_03790 Prbcl400 gltA Prbcl400 SBPase/FBPase KanR |
SA094213 | SA7 BR3-1 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD Pcpcb300 PEPC SmR , DDOP62_03790 Prbcl400 gltA Prbcl400 SBPase/FBPase KanR |
SA094214 | SA2 BR1-1 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD SmR |
SA094215 | SA2 BR1-3 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD SmR |
SA094216 | SA2 BR3-2 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD SmR |
SA094217 | SA2 BR3-3 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD SmR |
SA094218 | SA2 BR3-1 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD SmR |
SA094219 | SA2 BR2-3 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD SmR |
SA094220 | SA2 BR2-1 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD SmR |
SA094221 | SA2 BR2-2 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD SmR |
SA094222 | SA2 BR1-2 | △DOP62_03525 PpsbaI OgdA PpsbaIII SsaD SmR |
SA094178 | WT EP BR2-2 | Wild type |
SA094179 | WT EP BR2-3 | Wild type |
SA094180 | WT EP BR3-1 | Wild type |
SA094181 | WT EP BR2-1 | Wild type |
SA094182 | WT EP BR1-3 | Wild type |
SA094183 | WT BR1-1 | Wild type |
SA094184 | WT EP BR1-1 | Wild type |
SA094185 | WT EP BR1-2 | Wild type |
SA094186 | WT EP BR3-3 | Wild type |
SA094187 | WT EP BR3-2 | Wild type |
SA094188 | WT BR2-1 | Wild type |
SA094189 | WT BR1-3 | Wild type |
SA094190 | WT BR1-2 | Wild type |
SA094191 | WT BR2-3 | Wild type |
SA094192 | WT BR2-2 | Wild type |
SA094193 | WT BR3-3 | Wild type |
SA094194 | WT BR3-2 | Wild type |
SA094195 | WT BR3-1 | Wild type |
Showing results 1 to 45 of 45 |