Summary of Study ST002330
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001494. The data can be accessed directly via it's Project DOI: 10.21228/M8MD91 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST002330 |
| Study Title | Early-stage responses to Plasmodiophora brassicae at the metabolome levels in clubroot resistant and susceptible oilseed Brassica napus |
| Study Type | Timecourse experiment |
| Study Summary | A total of 36 samples comprised two types of genotypes [CR (5 individuals pooled in each biological replicate) and CS (5 individuals pooled in each biological replicate)], two treatments (inoculated and uninoculated) and three biological replicates generated from three independent experiments and collected at 1-, 4-, and 7–DPI were used to extract primary and secondary metabolites and analyse the differences among the treatments. |
| Institute | Trent University |
| Department | Biology |
| Laboratory | Emery Lab |
| Last Name | Kisiala |
| First Name | Anna |
| Address | 1600 West Bank Drive, Trent University |
| annakisiala@trentu.ca | |
| Phone | 7057481011 |
| Submit Date | 2022-10-17 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | mzML |
| Analysis Type Detail | LC-MS |
| Release Date | 2022-11-16 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Plant; Subject species: Brassica napus (Factor headings shown in green)
| mb_sample_id | local_sample_id | Developmental stage (DPI) |
|---|---|---|
| SA229641 | C18-RN3-neg | day 1 | Genotype:Resistant | Treatment:Control |
| SA229642 | HILIC-RN3-pos | day 1 | Genotype:Resistant | Treatment:Control |
| SA229643 | C18-RN1-pos | day 1 | Genotype:Resistant | Treatment:Control |
| SA229644 | HILIC-RN2-neg | day 1 | Genotype:Resistant | Treatment:Control |
| SA229645 | HILIC-RN3-neg | day 1 | Genotype:Resistant | Treatment:Control |
| SA229646 | C18-RN3-pos | day 1 | Genotype:Resistant | Treatment:Control |
| SA229647 | HILIC-RN2-pos | day 1 | Genotype:Resistant | Treatment:Control |
| SA229648 | C18-RN1-neg | day 1 | Genotype:Resistant | Treatment:Control |
| SA229649 | HILIC-RN1-neg | day 1 | Genotype:Resistant | Treatment:Control |
| SA229650 | HILIC-RN1-pos | day 1 | Genotype:Resistant | Treatment:Control |
| SA229651 | C18-RN2-pos | day 1 | Genotype:Resistant | Treatment:Control |
| SA229652 | C18-RN2-neg | day 1 | Genotype:Resistant | Treatment:Control |
| SA229653 | C18-RN6-neg | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229654 | HILIC-RN5-neg | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229655 | HILIC-RN6-neg | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229656 | HILIC-RN5-pos | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229657 | HILIC-RN6-pos | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229658 | C18-RN6-pos | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229659 | HILIC-RN4-pos | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229660 | C18-RN5-neg | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229661 | HILIC-RN4-neg | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229662 | C18-RN4-neg | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229663 | C18-RN5-pos | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229664 | C18-RN4-pos | day 1 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229665 | C18-RN9-pos | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229666 | HILIC-RN8-neg | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229667 | HILIC-RN9-pos | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229668 | HILIC-RN9-neg | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229669 | C18-RN9-neg | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229670 | HILIC-RN8-pos | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229671 | C18-RN7-neg | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229672 | C18-RN8-neg | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229673 | HILIC-RN7-pos | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229674 | C18-RN7-pos | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229675 | HILIC-RN7-neg | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229676 | C18-RN8-pos | day 1 | Genotype:Susceptible | Treatment:Control |
| SA229677 | C18-RN12-neg | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229678 | C18-RN12-pos | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229679 | HILIC-RN12-neg | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229680 | HILIC-RN11-neg | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229681 | HILIC-RN12-pos | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229682 | HILIC-RN10-pos | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229683 | C18-RN10-pos | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229684 | HILIC-RN11-pos | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229685 | HILIC-RN10-neg | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229686 | C18-RN10-neg | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229687 | C18-RN11-pos | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229688 | C18-RN11-neg | day 1 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229689 | C18-RN15-pos | day 4 | Genotype:Resistant | Treatment:Control |
| SA229690 | C18-RN15-neg | day 4 | Genotype:Resistant | Treatment:Control |
| SA229691 | HILIC-RN15-neg | day 4 | Genotype:Resistant | Treatment:Control |
| SA229692 | HILIC-RN14-neg | day 4 | Genotype:Resistant | Treatment:Control |
| SA229693 | HILIC-RN15-pos | day 4 | Genotype:Resistant | Treatment:Control |
| SA229694 | HILIC-RN14-pos | day 4 | Genotype:Resistant | Treatment:Control |
| SA229695 | HILIC-RN13-pos | day 4 | Genotype:Resistant | Treatment:Control |
| SA229696 | C18-RN13-pos | day 4 | Genotype:Resistant | Treatment:Control |
| SA229697 | HILIC-RN13-neg | day 4 | Genotype:Resistant | Treatment:Control |
| SA229698 | C18-RN13-neg | day 4 | Genotype:Resistant | Treatment:Control |
| SA229699 | C18-RN14-pos | day 4 | Genotype:Resistant | Treatment:Control |
| SA229700 | C18-RN14-neg | day 4 | Genotype:Resistant | Treatment:Control |
| SA229701 | C18-RN18-pos | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229702 | C18-RN18-neg | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229703 | HILIC-RN18-neg | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229704 | HILIC-RN17-neg | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229705 | HILIC-RN18-pos | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229706 | C18-RN16-pos | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229707 | HILIC-RN16-pos | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229708 | HILIC-RN17-pos | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229709 | HILIC-RN16-neg | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229710 | C18-RN16-neg | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229711 | C18-RN17-pos | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229712 | C18-RN17-neg | day 4 | Genotype:Resistant | Treatment:Treated with Plasmodiophora brassicae |
| SA229713 | C18-RN21-neg | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229714 | C18-RN21-pos | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229715 | HILIC-RN21-neg | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229716 | HILIC-RN20-neg | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229717 | HILIC-RN21-pos | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229718 | C18-RN19-pos | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229719 | HILIC-RN19-pos | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229720 | HILIC-RN20-pos | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229721 | HILIC-RN19-neg | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229722 | C18-RN19-neg | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229723 | C18-RN20-pos | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229724 | C18-RN20-neg | day 4 | Genotype:Susceptible | Treatment:Control |
| SA229725 | C18-RN24-pos | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229726 | C18-RN24-neg | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229727 | HILIC-RN24-neg | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229728 | HILIC-RN23-neg | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229729 | HILIC-RN24-pos | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229730 | HILIC-RN23-pos | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229731 | HILIC-RN22-pos | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229732 | C18-RN22-pos | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229733 | HILIC-RN22-neg | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229734 | C18-RN22-neg | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229735 | C18-RN23-pos | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229736 | C18-RN23-neg | day 4 | Genotype:Susceptible | Treatment:Treated with Plasmodiophora brassicae |
| SA229737 | C18-RN27-pos | day 7 | Genotype:Resistant | Treatment:Control |
| SA229738 | C18-RN27-neg | day 7 | Genotype:Resistant | Treatment:Control |
| SA229739 | HILIC-RN27-neg | day 7 | Genotype:Resistant | Treatment:Control |
| SA229740 | HILIC-RN26-neg | day 7 | Genotype:Resistant | Treatment:Control |
