Summary of Study ST002509
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001620. The data can be accessed directly via it's Project DOI: 10.21228/M89B04 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST002509 |
Study Title | Time course 1: Growth of Eggerthella lenta in defined media |
Study Type | Untargeted LC-MS |
Study Summary | This dataset contains untargeted metabolomics analysis of supernatants from 3 strains of Eggerthella lenta grown in defined EDM1 media with varying acetate concentrations. |
Institute | University of California, San Francisco |
Last Name | Noecker |
First Name | Cecilia |
Address | 513 Parnassus Ave HSW1501, San Francisco, CA 94143 |
cecilia.noecker@ucsf.edu | |
Phone | 415-502-3264 |
Submit Date | 2023-03-17 |
Raw Data Available | Yes |
Raw Data File Type(s) | mzML, raw(Thermo) |
Analysis Type Detail | LC-MS |
Release Date | 2023-04-04 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Bacteria; Subject species: Eggerthella lenta (Factor headings shown in green)
mb_sample_id | local_sample_id | Strain | AcetateConcentration_mM | Time |
---|---|---|---|---|
SA252438 | 2243_0_TP1_1_R2 | 2243 | 0 | 16.5 |
SA252439 | 2243_0_TP1_1_R3 | 2243 | 0 | 16.5 |
SA252440 | 2243_0_TP1_1_R1 | 2243 | 0 | 16.5 |
SA252441 | 2243_0_TP2_1_R3 | 2243 | 0 | 21.5 |
SA252442 | 2243_0_TP2_1_R2 | 2243 | 0 | 21.5 |
SA252443 | 2243_0_TP2_1_R1 | 2243 | 0 | 21.5 |
SA252444 | 2243_0_TP3_1_R3 | 2243 | 0 | 26 |
SA252445 | 2243_0_TP3_1_R2 | 2243 | 0 | 26 |
SA252446 | 2243_0_TP3_1_R1 | 2243 | 0 | 26 |
SA252447 | 2243_0_TP4_1_R3 | 2243 | 0 | 30 |
SA252448 | 2243_0_TP4_1_R2 | 2243 | 0 | 30 |
SA252449 | 2243_0_TP4_1_R1 | 2243 | 0 | 30 |
SA252450 | 2243_0_TP5_1_R3 | 2243 | 0 | 42 |
SA252451 | 2243_0_TP5_1_R2 | 2243 | 0 | 42 |
SA252452 | 2243_0_TP5_1_R1 | 2243 | 0 | 42 |
SA252453 | 2243_0_TP6_1_R3 | 2243 | 0 | 50 |
SA252454 | 2243_0_TP6_1_R2 | 2243 | 0 | 50 |
SA252455 | 2243_0_TP6_1_R1 | 2243 | 0 | 50 |
SA252456 | 2243_10Add_TP1_1_R3 | 2243 | 10Add | 16.5 |
SA252457 | 2243_10Add_TP1_1_R2 | 2243 | 10Add | 16.5 |
SA252458 | 2243_10Add_TP1_1_R1 | 2243 | 10Add | 16.5 |
SA252459 | 2243_10Add_TP2_1_R3 | 2243 | 10Add | 21.5 |
SA252460 | 2243_10Add_TP2_1_R2 | 2243 | 10Add | 21.5 |
SA252461 | 2243_10Add_TP2_1_R1 | 2243 | 10Add | 21.5 |
SA252462 | 2243_10Add_TP3_1_R1 | 2243 | 10Add | 26 |
SA252463 | 2243_10Add_TP3_1_R3 | 2243 | 10Add | 26 |
SA252464 | 2243_10Add_TP3_1_R2 | 2243 | 10Add | 26 |
SA252465 | 2243_10Add_TP4_1_R1 | 2243 | 10Add | 30 |
SA252466 | 2243_10Add_TP4_1_R2 | 2243 | 10Add | 30 |
SA252467 | 2243_10Add_TP4_1_R3 | 2243 | 10Add | 30 |
SA252468 | 2243_10Add_TP5_1_R2 | 2243 | 10Add | 42 |
SA252469 | 2243_10Add_TP5_1_R3 | 2243 | 10Add | 42 |
SA252470 | 2243_10Add_TP5_1_R1 | 2243 | 10Add | 42 |
SA252471 | 2243_10Add_TP6_1_R3 | 2243 | 10Add | 50 |
SA252472 | 2243_10Add_TP6_1_R2 | 2243 | 10Add | 50 |
SA252473 | 2243_10Add_TP6_1_R1 | 2243 | 10Add | 50 |
SA252474 | 2243_10_TP1_1_R3 | 2243 | 10 | 16.5 |
SA252475 | 2243_10_TP1_1_R1 | 2243 | 10 | 16.5 |
SA252476 | 2243_10_TP1_1_R2 | 2243 | 10 | 16.5 |
SA252477 | 2243_10_TP2_1_R2 | 2243 | 10 | 21.5 |
SA252478 | 2243_10_TP2_1_R1 | 2243 | 10 | 21.5 |
SA252479 | 2243_10_TP2_1_R3 | 2243 | 10 | 21.5 |
SA252480 | 2243_10_TP3_1_R2 | 2243 | 10 | 26 |
SA252481 | 2243_10_TP3_1_R3 | 2243 | 10 | 26 |
SA252482 | 2243_10_TP3_1_R1 | 2243 | 10 | 26 |
SA252483 | 2243_10_TP4_1_R3 | 2243 | 10 | 30 |
SA252484 | 2243_10_TP4_1_R1 | 2243 | 10 | 30 |
SA252485 | 2243_10_TP4_1_R2 | 2243 | 10 | 30 |
SA252486 | 2243_10_TP5_1_R2 | 2243 | 10 | 42 |
SA252487 | 2243_10_TP5_1_R1 | 2243 | 10 | 42 |
SA252488 | 2243_10_TP5_1_R3 | 2243 | 10 | 42 |
SA252489 | 2243_10_TP6_1_R3 | 2243 | 10 | 50 |
SA252490 | 2243_10_TP6_1_R1 | 2243 | 10 | 50 |
SA252491 | 2243_10_TP6_1_R2 | 2243 | 10 | 50 |
SA252492 | 2243_1_TP1_1_R2 | 2243 | 1 | 16.5 |
SA252493 | 2243_1_TP1_1_R1 | 2243 | 1 | 16.5 |
SA252494 | 2243_1_TP1_1_R3 | 2243 | 1 | 16.5 |
SA252495 | 2243_1_TP2_1_R1 | 2243 | 1 | 21.5 |
SA252496 | 2243_1_TP2_1_R2 | 2243 | 1 | 21.5 |
SA252497 | 2243_1_TP2_1_R3 | 2243 | 1 | 21.5 |
SA252498 | 2243_1_TP3_1_R2 | 2243 | 1 | 26 |
SA252499 | 2243_1_TP3_1_R3 | 2243 | 1 | 26 |
SA252500 | 2243_1_TP3_1_R1 | 2243 | 1 | 26 |
SA252501 | 2243_1_TP4_1_R1 | 2243 | 1 | 30 |
SA252502 | 2243_1_TP4_1_R2 | 2243 | 1 | 30 |
SA252503 | 2243_1_TP5_1_R2 | 2243 | 1 | 42 |
SA252504 | 2243_1_TP5_1_R1 | 2243 | 1 | 42 |
SA252505 | 2243_1_TP5_1_R3 | 2243 | 1 | 42 |
SA252506 | 2243_1_TP6_1_R2 | 2243 | 1 | 50 |
SA252507 | 2243_1_TP6_1_R3 | 2243 | 1 | 50 |
SA252508 | 2243_1_TP6_1_R1 | 2243 | 1 | 50 |
SA252509 | AB8_0_TP1_1_R3 | AB8 | 0 | 16.5 |
SA252510 | AB8_0_TP1_1_R2 | AB8 | 0 | 16.5 |
SA252511 | AB8_0_TP1_1_R1 | AB8 | 0 | 16.5 |
SA252512 | AB8_0_TP2_1_R1 | AB8 | 0 | 21.5 |
SA252513 | AB8_0_TP2_1_R3 | AB8 | 0 | 21.5 |
SA252514 | AB8_0_TP2_1_R2 | AB8 | 0 | 21.5 |
SA252515 | AB8_0_TP3_1_R1 | AB8 | 0 | 26 |
SA252516 | AB8_0_TP3_1_R2 | AB8 | 0 | 26 |
SA252517 | AB8_0_TP4_1_R2 | AB8 | 0 | 30 |
SA252518 | AB8_0_TP4_1_R3 | AB8 | 0 | 30 |
SA252519 | AB8_0_TP4_1_R1 | AB8 | 0 | 30 |
SA252520 | AB8_0_TP5_1_R2 | AB8 | 0 | 42 |
SA252521 | AB8_0_TP5_1_R3 | AB8 | 0 | 42 |
SA252522 | AB8_0_TP5_1_R1 | AB8 | 0 | 42 |
SA252523 | AB8_0_TP6_1_R2 | AB8 | 0 | 50 |
SA252524 | AB8_0_TP6_1_R3 | AB8 | 0 | 50 |
SA252525 | AB8_0_TP6_1_R1 | AB8 | 0 | 50 |
SA252526 | AB8_10_TP1_1_R3 | AB8 | 10 | 16.5 |
SA252527 | AB8_10_TP1_1_R1 | AB8 | 10 | 16.5 |
SA252528 | AB8_10_TP1_1_R2 | AB8 | 10 | 16.5 |
SA252529 | AB8_10_TP2_1_R1 | AB8 | 10 | 21.5 |
SA252530 | AB8_10_TP2_1_R2 | AB8 | 10 | 21.5 |
SA252531 | AB8_10_TP2_1_R3 | AB8 | 10 | 21.5 |
SA252532 | AB8_10_TP3_1_R1 | AB8 | 10 | 26 |
SA252533 | AB8_10_TP3_1_R2 | AB8 | 10 | 26 |
SA252534 | AB8_10_TP3_1_R3 | AB8 | 10 | 26 |
SA252535 | AB8_10_TP4_1_R3 | AB8 | 10 | 30 |
SA252536 | AB8_10_TP4_1_R2 | AB8 | 10 | 30 |
SA252537 | AB8_10_TP4_1_R1 | AB8 | 10 | 30 |