Summary of Study ST002516
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001620. The data can be accessed directly via it's Project DOI: 10.21228/M89B04 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST002516 |
Study Title | Time course 2: Growth of Eggerthella lenta in defined media with some samples receiving 13C2 stable isotope labeled acetate |
Study Type | Untargeted LC-MS |
Study Summary | This dataset contains untargeted metabolomics analysis of supernatants from 3 strains of Eggerthella lenta grown in defined EDM1 media with varying acetate concentrations. One set of samples grew in EDM1 containing 13C2 stable isotope labeled acetate. |
Institute | University of California, San Francisco |
Last Name | Noecker |
First Name | Cecilia |
Address | 513 Parnassus Ave HSW1501, San Francisco, CA 94143 |
cecilia.noecker@ucsf.edu | |
Phone | 415-502-3264 |
Submit Date | 2023-03-22 |
Raw Data Available | Yes |
Raw Data File Type(s) | mzML, raw(Thermo) |
Analysis Type Detail | LC-MS |
Release Date | 2023-04-10 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Bacteria; Subject species: Eggerthella lenta (Factor headings shown in green)
mb_sample_id | local_sample_id | Strain2 | AcetateGroup | TimePoint | Time |
---|---|---|---|---|---|
SA253216 | 2243_0_TP0_1 | 2243 | 0 | TP0 | 0 |
SA253217 | 2243_0_TP0_3 | 2243 | 0 | TP0 | 0 |
SA253218 | 2243_0_TP0_2 | 2243 | 0 | TP0 | 0 |
SA253219 | 2243_0_TP1_3 | 2243 | 0 | TP1 | 15 |
SA253220 | 2243_0_TP1_1 | 2243 | 0 | TP1 | 15 |
SA253221 | 2243_0_TP1_2 | 2243 | 0 | TP1 | 15 |
SA253222 | 2243_0_TP2_2 | 2243 | 0 | TP2 | 18.5 |
SA253223 | 2243_0_TP2_3 | 2243 | 0 | TP2 | 18.5 |
SA253224 | 2243_0_TP2_1 | 2243 | 0 | TP2 | 18.5 |
SA253225 | 2243_0_TP3_3 | 2243 | 0 | TP3 | 23 |
SA253226 | 2243_0_TP3_2 | 2243 | 0 | TP3 | 23 |
SA253227 | 2243_0_TP3_1 | 2243 | 0 | TP3 | 23 |
SA253228 | 2243_0_TP4_3 | 2243 | 0 | TP4 | 28.5 |
SA253229 | 2243_0_TP4_1 | 2243 | 0 | TP4 | 28.5 |
SA253230 | 2243_0_TP4_2 | 2243 | 0 | TP4 | 28.5 |
SA253231 | 2243_0_TP5_3 | 2243 | 0 | TP5 | 39 |
SA253232 | 2243_0_TP5_1 | 2243 | 0 | TP5 | 39 |
SA253233 | 2243_0_TP5_2 | 2243 | 0 | TP5 | 39 |
SA253234 | 2243_0_TP6_1 | 2243 | 0 | TP6 | 43 |
SA253235 | 2243_0_TP6_3 | 2243 | 0 | TP6 | 43 |
SA253236 | 2243_0_TP6_2 | 2243 | 0 | TP6 | 43 |
SA253237 | 2243_0_TP7_3 | 2243 | 0 | TP7 | 47.5 |
SA253238 | 2243_0_TP7_2 | 2243 | 0 | TP7 | 47.5 |
SA253239 | 2243_0_TP7_1 | 2243 | 0 | TP7 | 47.5 |
SA253240 | 2243_0_TP8_1 | 2243 | 0 | TP8 | 64 |
SA253241 | 2243_0_TP8_2 | 2243 | 0 | TP8 | 64 |
SA253242 | 2243_0_TP8_3 | 2243 | 0 | TP8 | 64 |
SA253243 | 2243_10L_TP0_1 | 2243 | 10L | TP0 | 0 |
SA253244 | 2243_10L_TP0_3 | 2243 | 10L | TP0 | 0 |
SA253245 | 2243_10L_TP0_2 | 2243 | 10L | TP0 | 0 |
SA253246 | 2243_10L_TP1_3 | 2243 | 10L | TP1 | 15 |
SA253247 | 2243_10L_TP1_1 | 2243 | 10L | TP1 | 15 |
SA253248 | 2243_10L_TP1_2 | 2243 | 10L | TP1 | 15 |
SA253249 | 2243_10L_TP2_1 | 2243 | 10L | TP2 | 18.5 |
SA253250 | 2243_10L_TP2_2 | 2243 | 10L | TP2 | 18.5 |
SA253251 | 2243_10L_TP2_3 | 2243 | 10L | TP2 | 18.5 |
SA253252 | 2243_10L_TP3_1 | 2243 | 10L | TP3 | 23 |
SA253253 | 2243_10L_TP3_2 | 2243 | 10L | TP3 | 23 |
SA253254 | 2243_10L_TP3_3 | 2243 | 10L | TP3 | 23 |
SA253255 | 2243_1L_TP4_2 | 2243 | 10L | TP4 | 28.5 |
SA253256 | 2243_1L_TP4_1 | 2243 | 10L | TP4 | 28.5 |
SA253257 | 2243_1L_TP4_3 | 2243 | 10L | TP4 | 28.5 |
SA253258 | 2243_1L_TP5_3 | 2243 | 10L | TP5 | 39 |
SA253259 | 2243_1L_TP5_1 | 2243 | 10L | TP5 | 39 |
SA253260 | 2243_1L_TP5_2 | 2243 | 10L | TP5 | 39 |
SA253261 | 2243_1L_TP6_3 | 2243 | 10L | TP6 | 43 |
SA253262 | 2243_1L_TP6_2 | 2243 | 10L | TP6 | 43 |
SA253263 | 2243_1L_TP6_1 | 2243 | 10L | TP6 | 43 |
SA253264 | 2243_1L_TP7_2 | 2243 | 10L | TP7 | 47.5 |
SA253265 | 2243_1L_TP7_1 | 2243 | 10L | TP7 | 47.5 |
SA253266 | 2243_1L_TP7_3 | 2243 | 10L | TP7 | 47.5 |
SA253267 | 2243_10L_TP8_1 | 2243 | 10L | TP8 | 64 |
SA253268 | 2243_10L_TP8_3 | 2243 | 10L | TP8 | 64 |
SA253269 | 2243_10L_TP8_2 | 2243 | 10L | TP8 | 64 |
SA253270 | 2243_10_TP0_2 | 2243 | 10 | TP0 | 0 |
SA253271 | 2243_10_TP0_3 | 2243 | 10 | TP0 | 0 |
SA253272 | 2243_10_TP0_1 | 2243 | 10 | TP0 | 0 |
SA253273 | 2243_10_TP1_2 | 2243 | 10 | TP1 | 15 |
SA253274 | 2243_10_TP1_1 | 2243 | 10 | TP1 | 15 |
SA253275 | 2243_10_TP1_3 | 2243 | 10 | TP1 | 15 |
SA253276 | 2243_10_TP2_2 | 2243 | 10 | TP2 | 18.5 |
SA253277 | 2243_10_TP2_3 | 2243 | 10 | TP2 | 18.5 |
SA253278 | 2243_10_TP2_1 | 2243 | 10 | TP2 | 18.5 |
SA253279 | 2243_10_TP3_1 | 2243 | 10 | TP3 | 23 |
SA253280 | 2243_10_TP3_3 | 2243 | 10 | TP3 | 23 |
SA253281 | 2243_10_TP3_2 | 2243 | 10 | TP3 | 23 |
SA253282 | 2243_1_TP4_3 | 2243 | 10 | TP4 | 28.5 |
SA253283 | 2243_1_TP4_2 | 2243 | 10 | TP4 | 28.5 |
SA253284 | 2243_1_TP4_1 | 2243 | 10 | TP4 | 28.5 |
SA253285 | 2243_1_TP5_2 | 2243 | 10 | TP5 | 39 |
SA253286 | 2243_1_TP5_1 | 2243 | 10 | TP5 | 39 |
SA253287 | 2243_1_TP5_3 | 2243 | 10 | TP5 | 39 |
SA253288 | 2243_1_TP6_1 | 2243 | 10 | TP6 | 43 |
SA253289 | 2243_1_TP6_3 | 2243 | 10 | TP6 | 43 |
SA253290 | 2243_1_TP6_2 | 2243 | 10 | TP6 | 43 |
SA253291 | 2243_1_TP7_2 | 2243 | 10 | TP7 | 47.5 |
SA253292 | 2243_1_TP7_3 | 2243 | 10 | TP7 | 47.5 |
SA253293 | 2243_1_TP7_1 | 2243 | 10 | TP7 | 47.5 |
SA253294 | 2243_10_TP8_3 | 2243 | 10 | TP8 | 64 |
SA253295 | 2243_10_TP8_2 | 2243 | 10 | TP8 | 64 |
SA253296 | 2243_10_TP8_1 | 2243 | 10 | TP8 | 64 |
SA253297 | 2243_1L_TP0_1 | 2243 | 1L | TP0 | 0 |
SA253298 | 2243_1L_TP0_3 | 2243 | 1L | TP0 | 0 |
SA253299 | 2243_1L_TP0_2 | 2243 | 1L | TP0 | 0 |
SA253300 | 2243_1L_TP1_2 | 2243 | 1L | TP1 | 15 |
SA253301 | 2243_1L_TP1_1 | 2243 | 1L | TP1 | 15 |
SA253302 | 2243_1L_TP1_3 | 2243 | 1L | TP1 | 15 |
SA253303 | 2243_1L_TP2_1 | 2243 | 1L | TP2 | 18.5 |
SA253304 | 2243_1L_TP2_2 | 2243 | 1L | TP2 | 18.5 |
SA253305 | 2243_1L_TP2_3 | 2243 | 1L | TP2 | 18.5 |
SA253306 | 2243_1L_TP3_3 | 2243 | 1L | TP3 | 23 |
SA253307 | 2243_1L_TP3_2 | 2243 | 1L | TP3 | 23 |
SA253308 | 2243_1L_TP3_1 | 2243 | 1L | TP3 | 23 |
SA253309 | 2243_10L_TP4_2 | 2243 | 1L | TP4 | 28.5 |
SA253310 | 2243_10L_TP4_1 | 2243 | 1L | TP4 | 28.5 |
SA253311 | 2243_10L_TP4_3 | 2243 | 1L | TP4 | 28.5 |
SA253312 | 2243_10L_TP5_1 | 2243 | 1L | TP5 | 39 |
SA253313 | 2243_10L_TP5_2 | 2243 | 1L | TP5 | 39 |
SA253314 | 2243_10L_TP6_3 | 2243 | 1L | TP6 | 43 |
SA253315 | 2243_10L_TP6_2 | 2243 | 1L | TP6 | 43 |