Summary of Study ST003114
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001935. The data can be accessed directly via it's Project DOI: 10.21228/M8M430 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST003114 |
Study Title | Lipidomics analyses in model membranes, isolated mitochondria and cellular systems to study how the local lipid environment affects BAX and BAK function during apoptosis. |
Study Summary | To investigate how the local lipid environment affects BAX and BAK function during apoptosis, we performed quantitative analyses of different lipid classes (glycerophospholipids, fatty acids, ceramides and sphingomyelins) in cultured cells, isolated mitochondria and lipid nanodics formed by Styrene-Malic Acid (SMA) co-polymers. Ceramides, sphingomyelins, fatty acids and cardiolipins were analyzed by Liquid Chromatography coupled to Tandem Mass Spectrometry (LC-MS/MS). For glycerophospholipids (PC, PE, PI, PS, PG, PA) we applied direct infusion MS approaches (Shotgun Lipidomics). |
Institute | University of Cologne |
Department | Faculty of Medicine and University Hospital of Cologne, Cluster of Excellence Cellular Stress Responses in Aging-associated Diseases (CECAD) |
Laboratory | CECAD Lipidomics/Metabolomics Facility |
Last Name | Brodesser |
First Name | Susanne |
Address | Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany |
susanne.brodesser@uk-koeln.de | |
Phone | +49 221 478 84015 |
Submit Date | 2023-08-16 |
Raw Data Available | Yes |
Raw Data File Type(s) | mzML |
Analysis Type Detail | LC-MS |
Release Date | 2024-03-13 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Cultured cells; Subject species: Homo sapiens (Factor headings shown in green)
mb_sample_id | local_sample_id | Sample source | Genotype | Condition |
---|---|---|---|---|
SA337372 | S07_pulldown_Apoptosis_01.09 | mitochondrial SMALPs | mEGFP-BAK | apoptotic |
SA337373 | S09_pulldown_Apoptosis_31.09 | mitochondrial SMALPs | mEGFP-BAK | apoptotic |
SA337374 | S08_pulldown_Apoptosis_04.09 | mitochondrial SMALPs | mEGFP-BAK | apoptotic |
SA337375 | S06_pulldown_Apoptosis_22.08 | mitochondrial SMALPs | mEGFP-BAK | apoptotic |
SA337376 | S03_pulldown_Control_01.09 | mitochondrial SMALPs | mEGFP-BAK | control |
SA337377 | S04_pulldown_Control_04.09 | mitochondrial SMALPs | mEGFP-BAK | control |
SA337378 | S02_pulldown_Control_22.08 | mitochondrial SMALPs | mEGFP-BAK | control |
SA337379 | S05_pulldown_Control_31.09 | mitochondrial SMALPs | mEGFP-BAK | control |
SA337364 | S07_mitos_apoptosis.SMA_3 | mitochondrial SMALPs | WT | apoptotic |
SA337365 | S08_mitos_apoptosis.SMA_4 | mitochondrial SMALPs | WT | apoptotic |
SA337366 | S05_mitos_apoptosis.SMA_1 | mitochondrial SMALPs | WT | apoptotic |
SA337367 | S06_mitos_apoptosis.SMA_2 | mitochondrial SMALPs | WT | apoptotic |
SA337368 | S01_mitos_control.SMA_1 | mitochondrial SMALPs | WT | control |
SA337369 | S03_mitos_control.SMA_3 | mitochondrial SMALPs | WT | control |
SA337370 | S02_mitos_control.SMA_2 | mitochondrial SMALPs | WT | control |
SA337371 | S04_mitos_control.SMA_4 | mitochondrial SMALPs | WT | control |
SA337380 | S14_mitos_linoleic.acid_KO_2 | total mitochondria | FADS2 KO | linoleic acid |
SA337381 | S16_mitos_linoleic.acid_KO_4 | total mitochondria | FADS2 KO | linoleic acid |
SA337382 | S15_mitos_linoleic.acid_KO_3 | total mitochondria | FADS2 KO | linoleic acid |
SA337383 | S13_mitos_linoleic.acid_KO_1 | total mitochondria | FADS2 KO | linoleic acid |
SA337384 | S10_mitos_no.treatment_KO_2 | total mitochondria | FADS2 KO | untreated |
SA337385 | S09_smitos_no.treatment_KO_1 | total mitochondria | FADS2 KO | untreated |
SA337386 | S11_mitos_no.treatment_KO_3 | total mitochondria | FADS2 KO | untreated |
SA337387 | S12_mitos_no.treatment_KO_4 | total mitochondria | FADS2 KO | untreated |
SA337388 | S14_mitos_apoptosis_2 | total mitochondria | WT | apoptotic |
SA337389 | S13_mitos_apoptosis_1 | total mitochondria | WT | apoptotic |
SA337390 | S15_mitos_apoptosis_3 | total mitochondria | WT | apoptotic |
SA337391 | S16_mitos_apoptosis_4 | total mitochondria | WT | apoptotic |
SA337392 | S09_mitos_control_1 | total mitochondria | WT | control |
SA337393 | S11_mitos_control_3 | total mitochondria | WT | control |
SA337394 | S12_mitos_control_4 | total mitochondria | WT | control |
SA337395 | S10_mitos_control_2 | total mitochondria | WT | control |
SA337396 | S05_mitos_linoleic.acid_WT_1 | total mitochondria | WT | linoleic acid |
SA337397 | S08_mitos_linoleic.acid_WT_4 | total mitochondria | WT | linoleic acid |
SA337398 | S06_mitos_linoleic.acid_WT_2 | total mitochondria | WT | linoleic acid |
SA337399 | S07_mitos_linoleic.acid_WT_3 | total mitochondria | WT | linoleic acid |
SA337400 | S03_mitos_no.treatment_WT_3 | total mitochondria | WT | untreated |
SA337401 | S01_mitos_no.treatment_WT_1 | total mitochondria | WT | untreated |
SA337402 | S02_mitos_no.treatment_WT_2 | total mitochondria | WT | untreated |
SA337403 | S04_mitos_no.treatment_WT_4 | total mitochondria | WT | untreated |
Showing results 1 to 40 of 40 |