Summary of Study ST003075

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001915. The data can be accessed directly via it's Project DOI: 10.21228/M86137 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST003075
Study TitleHZV029 TwoPhase Metabolomics and Lipidomics
Study SummaryIn this study, a subset of plasma samples were processed using an in-house two phase extraction protocol based on the protocol originally proposed by Matayash et al. The resulting non-polar layer was then analyzed on a Thermo ScientificTM TranscendTM Duo LX-2 UHPLC system interfaced with high resolution Thermo ScientificTM Orbitrap ID-XTM TribidTM mass spectrometer with a HESI ionization source. This dataset was collected as a single batch and was used for the pipeline's ability to detect failed injections, which in this study, was simulated through the substitution of an empty vial for a missing study sample.
Institute
Jackson Laboratory for Genomic Medicine
LaboratoryShuzhao Li Laboratory
Last NameJoshua
First NameMitchell
Address10 Discovery Dr, Farmington CT 06032
Emailjoshua.mitchell@jax.org
Phone8608372474
Submit Date2024-02-15
PublicationsCommon data models to streamline metabolomics processing and annotation, and implementation in a Python pipeline Joshua Mitchell, Yuanye Chi, Maheshwor Thapa, Zhiqiang Pang, Jianguo Xia, Shuzhao Li doi: https://doi.org/10.1101/2024.02.13.580048
Raw Data AvailableYes
Raw Data File Type(s)mzML
Analysis Type DetailLC-MS
Release Date2024-05-24
Release Version1
Mitchell Joshua Mitchell Joshua
https://dx.doi.org/10.21228/M86137
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Factor Sample source
SA332322pooledsample_DDA_02DDA Pooled Study Plasma
SA332323pooledsample_DDA_01DDA Pooled Study Plasma
SA332324MT_20230807_007NIST Pooled NIST Reference Plasma
SA332325MT_20230807_008NIST Pooled NIST Reference Plasma
SA332326MT_20230807_124Pooled Pooled Study Plasma
SA332327MT_20230807_010Pooled Pooled Study Plasma
SA332328MT_20230807_123Pooled Pooled Study Plasma
SA332329MT_20230807_032Pooled Pooled Study Plasma
SA332330MT_20230807_076Pooled Pooled Study Plasma
SA332331MT_20230807_075Pooled Pooled Study Plasma
SA332332MT_20230807_054Pooled Pooled Study Plasma
SA332333MT_20230807_053Pooled Pooled Study Plasma
SA332334MT_20230807_098Pooled Pooled Study Plasma
SA332335MT_20230807_097Pooled Pooled Study Plasma
SA332336MT_20230807_009Pooled Pooled Study Plasma
SA332337MT_20230807_031Pooled Pooled Study Plasma
SA332338Blank_20230807_002Process_Blank Process Blank
SA332339Blank_20230807_004Process_Blank Process Blank
SA332340Blank_20230807_001Process_Blank Process Blank
SA332341Blank_20230807_005Process_Blank Process Blank
SA332342Blank_20230807_003Process_Blank Process Blank
SA332343Blank_20230807_006Process_Blank Process Blank
SA332344MT_20230807_005QC Pooled Commercial Plasma Sample
SA332345MT_20230807_004QC Pooled Commercial Plasma Sample
SA332346MT_20230807_006QC Pooled Commercial Plasma Sample
SA332347MT_20230807_003QC Pooled Commercial Plasma Sample
SA332348MT_20230807_001QC Pooled Commercial Plasma Sample
SA332349MT_20230807_126QC Pooled Commercial Plasma Sample
SA332350MT_20230807_002QC Pooled Commercial Plasma Sample
SA332351MT_20230807_125QC Pooled Commercial Plasma Sample
SA332352Sol_blank_20230807_004Solvent_Blank Solvent Blank
SA332353Sol_blank_20230807_003Solvent_Blank Solvent Blank
SA332354Sol_blank_20230807_002Solvent_Blank Solvent Blank
SA332355Sol_blank_20230807_001Solvent_Blank Solvent Blank
SA332356Blank_std_20230807_1_002Standards_Blank Blank w/ Stds
SA332357Blank_std_20230807_1_001Standards_Blank Blank w/ Stds
SA332358MT_20230807_091Unknown Plasma
SA332359MT_20230807_090Unknown Plasma
SA332360MT_20230807_089Unknown Plasma
SA332361MT_20230807_095Unknown Plasma
SA332362MT_20230807_093Unknown Plasma
SA332363MT_20230807_094Unknown Plasma
SA332364MT_20230807_092Unknown Plasma
SA332365MT_20230807_082Unknown Plasma
SA332366MT_20230807_080Unknown Plasma
SA332367MT_20230807_081Unknown Plasma
SA332368MT_20230807_079Unknown Plasma
SA332369MT_20230807_078Unknown Plasma
SA332370MT_20230807_077Unknown Plasma
SA332371MT_20230807_096Unknown Plasma
SA332372MT_20230807_083Unknown Plasma
SA332373MT_20230807_087Unknown Plasma
SA332374MT_20230807_086Unknown Plasma
SA332375MT_20230807_085Unknown Plasma
SA332376MT_20230807_084Unknown Plasma
SA332377MT_20230807_088Unknown Plasma
SA332378MT_20230807_104Unknown Plasma
SA332379MT_20230807_115Unknown Plasma
SA332380MT_20230807_116Unknown Plasma
SA332381MT_20230807_114Unknown Plasma
SA332382MT_20230807_113Unknown Plasma
SA332383MT_20230807_112Unknown Plasma
SA332384MT_20230807_117Unknown Plasma
SA332385MT_20230807_118Unknown Plasma
SA332386MT_20230807_122Unknown Plasma
SA332387MT_20230807_121Unknown Plasma
SA332388MT_20230807_120Unknown Plasma
SA332389MT_20230807_119Unknown Plasma
SA332390MT_20230807_074Unknown Plasma
SA332391MT_20230807_111Unknown Plasma
SA332392MT_20230807_103Unknown Plasma
SA332393MT_20230807_102Unknown Plasma
SA332394MT_20230807_101Unknown Plasma
SA332395MT_20230807_100Unknown Plasma
SA332396MT_20230807_105Unknown Plasma
SA332397MT_20230807_106Unknown Plasma
SA332398MT_20230807_110Unknown Plasma
SA332399MT_20230807_109Unknown Plasma
SA332400MT_20230807_108Unknown Plasma
SA332401MT_20230807_107Unknown Plasma
SA332402MT_20230807_099Unknown Plasma
SA332403MT_20230807_061Unknown Plasma
SA332404MT_20230807_030Unknown Plasma
SA332405MT_20230807_033Unknown Plasma
SA332406MT_20230807_029Unknown Plasma
SA332407MT_20230807_028Unknown Plasma
SA332408MT_20230807_026Unknown Plasma
SA332409MT_20230807_027Unknown Plasma
SA332410MT_20230807_034Unknown Plasma
SA332411MT_20230807_035Unknown Plasma
SA332412MT_20230807_039Unknown Plasma
SA332413MT_20230807_040Unknown Plasma
SA332414MT_20230807_038Unknown Plasma
SA332415MT_20230807_037Unknown Plasma
SA332416MT_20230807_036Unknown Plasma
SA332417MT_20230807_025Unknown Plasma
SA332418MT_20230807_024Unknown Plasma
SA332419MT_20230807_015Unknown Plasma
SA332420MT_20230807_016Unknown Plasma
SA332421MT_20230807_014Unknown Plasma
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