Summary of Study ST003109

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001915. The data can be accessed directly via it's Project DOI: 10.21228/M86137 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST003109
Study TitleHZV029 Metabolomics
Study SummaryIn this study, plasma samples were processed using an in-house one phase extraction protocol as previously published (Siddiqa, A., et al., A pilot metabolomic study of drug interaction with the immune response to seasonal influenza vaccination. npj Vaccines, 2023. 8(1): p. 92. ). The resulting extract was then analyzed on a Thermo ScientificTM TranscendTM Duo LX-2 UHPLC system interfaced with high resolution Thermo ScientificTM Orbitrap ID-XTM TribidTM mass spectrometer with a HESI ionization source. This dataset was collected over 17 batches and was used to evaluate the QA/QC metrics produced by the pipeline and resulting MS2 annotations generated from a complimentary AcquireX (deep scan) MS2 dataset were compared to compound discoverer.
Institute
Jackson Laboratory for Genomic Medicine
LaboratoryShuzhao Li Laboratory
Last NameJoshua
First NameMitchell
Address10 Discovery Dr, Farmington CT 06032
Emailjoshua.mitchell@jax.org
Phone8608372474
Submit Date2024-02-15
PublicationsCommon data models to streamline metabolomics processing and annotation, and implementation in a Python pipeline Joshua Mitchell, Yuanye Chi, Maheshwor Thapa, Zhiqiang Pang, Jianguo Xia, Shuzhao Li doi: https://doi.org/10.1101/2024.02.13.580048
Raw Data AvailableYes
Raw Data File Type(s)mzML
Analysis Type DetailLC-MS
Release Date2024-05-24
Release Version1
Mitchell Joshua Mitchell Joshua
https://dx.doi.org/10.21228/M86137
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

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