Return to study ST000898 main page
MB Sample ID: SA052803
Local Sample ID: | Si p73_1.2 |
Subject ID: | SU000935 |
Subject Type: | Human |
Subject Species: | Homo sapiens |
Taxonomy ID: | 9606 |
Cell Biosource Or Supplier: | ATCC |
Cell Strain Details: | Daoy (ATCC® HTB-186™) |
Subject Comments: | cancer cell line |
Species Group: | Human |
Select appropriate tab below to view additional metadata details:
Combined analysis:
Analysis ID | AN001460 | AN001461 |
---|---|---|
Analysis type | MS | MS |
Chromatography type | HILIC | HILIC |
Chromatography system | Waters Acquity I-Class | Waters Acquity I-Class |
Column | Waters Acquity BEH Amide (50 x 2.1mm,1.7um) | Waters Acquity BEH Amide (50 x 2.1mm,1.7um) |
MS Type | ESI | ESI |
MS instrument type | QTOF | QTOF |
MS instrument name | Waters Synapt G2 QTOF | Waters Synapt G2 QTOF |
Ion Mode | POSITIVE | NEGATIVE |
Units | Peak Area | Peak Area |
MS:
MS ID: | MS001348 |
Analysis ID: | AN001460 |
Instrument Name: | Waters Synapt G2 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
MS Comments: | The raw data was converted to NetCDF files using the software DataBridge (Masslynx version 4.1, Waters). Peak detection and retention time alignment was performed using the R based software XCMS (Smith et al. 2006). The centWave function was used for peak detection and the function parameters were set as follows; the maximal deviation in m/z between scans was set to 8 ppm, the maximal and minimal peakwidth was set to 5 and 25 s respectively and the signal to noise ratio cutoff was set to 10. Retention time correction was performed using the “obiwarp” function. |
Ion Mode: | POSITIVE |
Capillary Temperature: | 500°C |
Capillary Voltage: | 1 kV |
Collision Energy: | 20- 45 eV collision ramp, MSE acquistion |
Source Temperature: | 120°C |
Dataformat: | NetCDF |
Scan Range Moverz: | m/z 50-800 |
MS ID: | MS001349 |
Analysis ID: | AN001461 |
Instrument Name: | Waters Synapt G2 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
MS Comments: | The raw data was converted to NetCDF files using the software DataBridge (Masslynx version 4.1, Waters). Peak detection and retention time alignment was performed using the R based software XCMS (Smith et al. 2006). The centWave function was used for peak detection and the function parameters were set as follows; the maximal deviation in m/z between scans was set to 8 ppm, the maximal and minimal peakwidth was set to 5 and 25 s respectively and the signal to noise ratio cutoff was set to 10. Retention time correction was performed using the “obiwarp” function. |
Ion Mode: | NEGATIVE |
Capillary Temperature: | 450°C |
Capillary Voltage: | 2 kV |
Collision Energy: | 20- 45 eV collision ramp, MSE acquistion |
Source Temperature: | 120°C |
Dataformat: | NetCDF |
Scan Range Moverz: | m/z 50-800 |