Summary of Study ST002787
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001737. The data can be accessed directly via it's Project DOI: 10.21228/M85X48 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST002787 |
Study Title | Metabolomic analysis of gut metabolites in colorectal cancer patients: correlation with disease development and outcome |
Study Summary | In this study, targeted metabolomic sequencing was performed on fecal samples from 35 colorectal cancer (CRC) patients, 37 colorectal adenoma patients (CRA), and 30 healthy controls (HC) to identify metabolite biomarkers. Orthogonal partial least squares discriminant analysis (OPLS-DA) was used to identify metabolomic features distinguishing the three groups. ROC analysis found that 9,10-diHOME, cholesterol CE (18:2), and lipoxinA4 distinguished CRC from HC with an AUC of 0.969. The study highlights the advantages and potential applications of using LC-MS for targeted metabolomic analysis. |
Institute | Wuhan University of Science and Technology |
Department | School of Medicine |
Laboratory | Hubei Province Key Laboratory of Occupational Hazard Identification and Control |
Last Name | Xie |
First Name | Zhufu |
Address | No.2 Huangjiahu Road, Hongshan District, Wuhan City, Hubei Province, China |
xiezhufu2020@outlook.com | |
Phone | 18171407470 |
Submit Date | 2023-05-07 |
Raw Data Available | Yes |
Raw Data File Type(s) | mzML |
Analysis Type Detail | LC-MS |
Release Date | 2024-07-01 |
Release Version | 1 |
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Sample Preparation:
Sampleprep ID: | SP002900 |
Sampleprep Summary: | The fecal samples were stored at -80°C until required and then thawed on ice prior to extraction. 400 µL of methanol was added to 20 mg of each sample, and each sample was blended in a blender for 3 minutes. The blended samples were then centrifuged at 12,000 rpm for 10 minutes at 4°C. The supernatant from each sample was collected and subjected to a second centrifugation at 12,000 rpm for 3 minutes at 4°C. The supernatant obtained after the second centrifugation was extracted for liquid chromatography tandem mass spectrometry (LC-MS/MS) analysis. The data acquisition instrumentation system primarily consisted of ultra-high liquid chromatography (UPLC) and tandem mass spectrometry (MS/MS). |