Summary of Study ST000005

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000004. The data can be accessed directly via it's Project DOI: 10.21228/M8MW26 This work is supported by NIH grant, U2C- DK119886.

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Study IDST000005
Study TitleTimecourse on RAW 264.7 cells treated with Kdo2-Lipid A and compactin
Study TypeTimecourse experiment
Study SummaryLipidomics studies on macrophages - RAW 264.7 cells treated with Kdo2-Lipid A and compactin. Experiments were conducted with RAW264.7 cells fed 10% fetal calf serum. 8-timepoint study: Measurements were taken at 0, 0.5,1,2,4,8, 12, and 24hrs for: (i) compactin, (ii) Kdo2-Lipid A, (iii) compactin + Kdo2-Lipid A. and (iv) control
Institute
LIPID MAPS
DepartmentMultiple
LaboratoryMultiple
Last NameFahy
First NameEoin
Emailefahy@ucsd.edu
Submit Date2013-02-20
PublicationsDennis, E.A. et al A mouse macrophage lipidome. J. Biol. Chem., 285, 39976-39985 (2010).
Raw Data AvailableNo
Analysis Type DetailGC-MS/LC-MS
Release Date2013-03-22
Release Version1
Eoin Fahy Eoin Fahy
https://dx.doi.org/10.21228/M8MW26
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000004
Project DOI:doi: 10.21228/M8MW26
Project Title:LIPID MAPS Lipidomics studies
Project Type:MS quantitative analysis
Project Summary:Multi-center quantitative lipidomics studies on samples from human and murine sources (LIPIDMAPS)
Institute:LIPID MAPS
Department:Multiple
Laboratory:Multiple
Last Name:Fahy
First Name:Eoin
Address:UCSD
Email:efahy@ucsd.edu
Funding Source:NIGMS

Subject:

Subject ID:SU000006
Subject Type:Animal
Subject Species:Mus musculus
Taxonomy ID:10090
Genotype Strain:RAW 264.7
Species Group:Mammal

Factors:

Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id Hours
SA054136KS0130.5 | Compactin:50uM | KLA:100ng/ml
SA054137KS0140.5 | Compactin:50uM | KLA:100ng/ml
SA054138KS0150.5 | Compactin:50uM | KLA:100ng/ml
SA054139KS0160.5 | Compactin:50uM | KLA:100ng/ml
SA054128KS0050.5 | Compactin:50uM | KLA:None
SA054129KS0060.5 | Compactin:50uM | KLA:None
SA054130KS0070.5 | Compactin:50uM | KLA:None
SA054131KS0080.5 | Compactin:50uM | KLA:None
SA054132KS0090.5 | Compactin:None | KLA:100ng/ml
SA054133KS0100.5 | Compactin:None | KLA:100ng/ml
SA054134KS0110.5 | Compactin:None | KLA:100ng/ml
SA054135KS0120.5 | Compactin:None | KLA:100ng/ml
SA054124KS0010.5 | Compactin:None | KLA:None
SA054125KS0020.5 | Compactin:None | KLA:None
SA054126KS0030.5 | Compactin:None | KLA:None
SA054127KS0040.5 | Compactin:None | KLA:None
SA054140KS0170 | Compactin:None | KLA:None
SA054141KS0180 | Compactin:None | KLA:None
SA054142KS0190 | Compactin:None | KLA:None
SA054143KS0200 | Compactin:None | KLA:None
SA054172KS04912 | Compactin:50uM | KLA:100ng/ml
SA054173KS05012 | Compactin:50uM | KLA:100ng/ml
SA054174KS05112 | Compactin:50uM | KLA:100ng/ml
SA054175KS05212 | Compactin:50uM | KLA:100ng/ml
SA054164KS04112 | Compactin:50uM | KLA:None
SA054165KS04212 | Compactin:50uM | KLA:None
SA054166KS04312 | Compactin:50uM | KLA:None
SA054167KS04412 | Compactin:50uM | KLA:None
SA054168KS04512 | Compactin:None | KLA:100ng/ml
SA054169KS04612 | Compactin:None | KLA:100ng/ml
SA054170KS04712 | Compactin:None | KLA:100ng/ml
SA054171KS04812 | Compactin:None | KLA:100ng/ml
SA054160KS03712 | Compactin:None | KLA:None
SA054161KS03812 | Compactin:None | KLA:None
SA054162KS03912 | Compactin:None | KLA:None
SA054163KS04012 | Compactin:None | KLA:None
SA054156KS0331 | Compactin:50uM | KLA:100ng/ml
SA054157KS0341 | Compactin:50uM | KLA:100ng/ml
SA054158KS0351 | Compactin:50uM | KLA:100ng/ml
SA054159KS0361 | Compactin:50uM | KLA:100ng/ml
SA054148KS0251 | Compactin:50uM | KLA:None
SA054149KS0261 | Compactin:50uM | KLA:None
SA054150KS0271 | Compactin:50uM | KLA:None
SA054151KS0281 | Compactin:50uM | KLA:None
SA054152KS0291 | Compactin:None | KLA:100ng/ml
SA054153KS0301 | Compactin:None | KLA:100ng/ml
SA054154KS0311 | Compactin:None | KLA:100ng/ml
SA054155KS0321 | Compactin:None | KLA:100ng/ml
SA054144KS0211 | Compactin:None | KLA:None
SA054145KS0221 | Compactin:None | KLA:None
SA054146KS0231 | Compactin:None | KLA:None
SA054147KS0241 | Compactin:None | KLA:None
SA054204KS08124 | Compactin:50uM | KLA:100ng/ml
SA054205KS08224 | Compactin:50uM | KLA:100ng/ml
SA054206KS08324 | Compactin:50uM | KLA:100ng/ml
SA054207KS08424 | Compactin:50uM | KLA:100ng/ml
SA054196KS07324 | Compactin:50uM | KLA:None
SA054197KS07424 | Compactin:50uM | KLA:None
SA054198KS07524 | Compactin:50uM | KLA:None
SA054199KS07624 | Compactin:50uM | KLA:None
SA054200KS07724 | Compactin:None | KLA:100ng/ml
SA054201KS07824 | Compactin:None | KLA:100ng/ml
SA054202KS07924 | Compactin:None | KLA:100ng/ml
SA054203KS08024 | Compactin:None | KLA:100ng/ml
SA054192KS06924 | Compactin:None | KLA:None
SA054193KS07024 | Compactin:None | KLA:None
SA054194KS07124 | Compactin:None | KLA:None
SA054195KS07224 | Compactin:None | KLA:None
SA054188KS0652 | Compactin:50uM | KLA:100ng/ml
SA054189KS0662 | Compactin:50uM | KLA:100ng/ml
SA054190KS0672 | Compactin:50uM | KLA:100ng/ml
SA054191KS0682 | Compactin:50uM | KLA:100ng/ml
SA054180KS0572 | Compactin:50uM | KLA:None
SA054181KS0582 | Compactin:50uM | KLA:None
SA054182KS0592 | Compactin:50uM | KLA:None
SA054183KS0602 | Compactin:50uM | KLA:None
SA054184KS0612 | Compactin:None | KLA:100ng/ml
SA054185KS0622 | Compactin:None | KLA:100ng/ml
SA054186KS0632 | Compactin:None | KLA:100ng/ml
SA054187KS0642 | Compactin:None | KLA:100ng/ml
SA054176KS0532 | Compactin:None | KLA:None
SA054177KS0542 | Compactin:None | KLA:None
SA054178KS0552 | Compactin:None | KLA:None
SA054179KS0562 | Compactin:None | KLA:None
SA054220KS0974 | Compactin:50uM | KLA:100ng/ml
SA054221KS0984 | Compactin:50uM | KLA:100ng/ml
SA054222KS0994 | Compactin:50uM | KLA:100ng/ml
SA054223KS1004 | Compactin:50uM | KLA:100ng/ml
SA054212KS0894 | Compactin:50uM | KLA:None
SA054213KS0904 | Compactin:50uM | KLA:None
SA054214KS0914 | Compactin:50uM | KLA:None
SA054215KS0924 | Compactin:50uM | KLA:None
SA054216KS0934 | Compactin:None | KLA:100ng/ml
SA054217KS0944 | Compactin:None | KLA:100ng/ml
SA054218KS0954 | Compactin:None | KLA:100ng/ml
SA054219KS0964 | Compactin:None | KLA:100ng/ml
SA054208KS0854 | Compactin:None | KLA:None
SA054209KS0864 | Compactin:None | KLA:None
SA054210KS0874 | Compactin:None | KLA:None
SA054211KS0884 | Compactin:None | KLA:None
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Collection:

Collection ID:CO000005
Collection Summary:-
Sample Type:Macrophages

Treatment:

Treatment ID:TR000007

Sample Preparation:

Sampleprep ID:SP000010
Sampleprep Summary:-

Combined analysis:

Analysis ID AN000012
Analysis type MS
Chromatography type
Chromatography system Multiple
Column Multiple
MS Type Multiple
MS instrument type Multiple
MS instrument name Multiple
Ion Mode UNSPECIFIED
Units pmol/ug DNA

Chromatography:

Chromatography ID:CH000005
Instrument Name:Multiple
Column Name:Multiple

MS:

MS ID:MS000012
Analysis ID:AN000012
Instrument Name:Multiple
Instrument Type:Multiple
MS Type:Multiple
Ion Mode:UNSPECIFIED
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