Summary of Study ST000463
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000355. The data can be accessed directly via it's Project DOI: 10.21228/M85C88 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST000463 |
| Study Title | CNS and peripheral metabolomics of calorie restriction in a mouse model of Alzheimer’s disease (part II) |
| Study Summary | This pilot metabolomic study will evaluate cecal specimens from an established mouse model of AD, the tq2576 mouse model of cerebral amyloid overexpression, in comparison to their non-transgenic (ntg) littermates. These animals were either on a CR or ad libitum (AL) diet, and specimens were collected at two time points (5 and 15 months of age). Tissue from this cohorts of mice have already undergone microbiome analysis, and await coordinated brain and peripheral tissue assessments. Future analysis will include metabolomics, RNA-seq, and microarray data to assess the gut-brain microbiome system in neurodegenerative disorders. |
| Institute | University of North Carolina |
| Laboratory | Sumner Lab |
| Last Name | Sumner |
| First Name | Susan |
| Address | Eastern Regional Comprehensive Metabolomics Resource Core, UNC Nutrition Research Institute, 500 Laureate Way, Kannapolis, NC, 28081 |
| susan_sumner @unc.edu | |
| Phone | 704-250-5066 |
| Submit Date | 2016-09-07 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | 1r |
| Analysis Type Detail | NMR |
| Release Date | 2017-10-03 |
| Release Version | 1 |
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Project:
| Project ID: | PR000355 |
| Project DOI: | doi: 10.21228/M85C88 |
| Project Title: | CNS and peripheral metabolomics of calorie restriction in a mouse model of Alzheimer’s disease |
| Project Summary: | Alzheimer’s disease (AD) is a devastating neurodegenerative disorder that robs people of their memory and cognitive function. Currently, no successful treatment or preventative measure exists for AD. Calorie restriction (CR) is a dietary regimen posited to suppress genetic programs of aging and reduce AD-related pathology. CR is known to enhance longevity and mitigate aging phenotypes in multiple model species. Mechanisms underlying the benefits of CR remain unknown, particularly in areas of the brain selectively vulnerable to age-related AD pathology such as the hippocampus, a region crucial for learning and memory. Moreover, AD pathology can be influenced by changes in diet, metabolism, and immunity, indicating that factors distant from the brain may play a role in pathogenesis. The intestinal microbiota, composed of trillions of microbial cells, influences host metabolism, immunity, and cognitive function, and is posited to be linked mechanistically to AD pathobiology, but a specific role remains to be adequately tested. We hypothesize that mechanisms underlying the benefits of CR are cell-type and organ specific, involving the gut-brain microbiome throughout the lifespan, this requiring subregional analysis in the brain as well as coordinated assessments of key peripheral targets including the liver, fecal pellets , and plasma. Thus, CR is proposed to be a viable treatment option that may ameliorate the development of AD-related pathology, and importantly, reveal mechanisms that attenuate age-related expression changes in vulnerable cells. |
| Institute: | New York University |
| Department: | Langone Medical Center |
| Last Name: | Ginsberg |
| First Name: | Stephen |
| Address: | 140 Old Orangeburg Road, Orangeburg, NY 10962 |
| Email: | stephen.ginsberg@nyumc.org |
| Phone: | 845-398-2170 |
Subject:
| Subject ID: | SU000484 |
| Subject Type: | Murine |
| Subject Species: | Mus musculus |
| Taxonomy ID: | 10090 |
| Species Group: | Mammal |
Factors:
Subject type: Murine; Subject species: Mus musculus (Factor headings shown in green)
| mb_sample_id | local_sample_id | Age |
|---|---|---|
| SA023346 | C_10 | 15 | Genotype:APP | Gender:F | Diet:AL |
| SA023347 | C_11 | 15 | Genotype:APP | Gender:F | Diet:AL |
| SA023348 | C_9 | 15 | Genotype:APP | Gender:F | Diet:AL |
| SA023349 | C_12 | 15 | Genotype:APP | Gender:F | Diet:AL |
| SA023350 | C_16 | 15 | Genotype:APP | Gender:F | Diet:CR |
| SA023351 | C_15 | 15 | Genotype:APP | Gender:F | Diet:CR |
| SA023352 | C_14 | 15 | Genotype:APP | Gender:F | Diet:CR |
| SA023353 | C_13 | 15 | Genotype:APP | Gender:F | Diet:CR |
| SA023354 | C_44 | 15 | Genotype:APP | Gender:M | Diet:AL |
| SA023355 | C_43 | 15 | Genotype:APP | Gender:M | Diet:AL |
| SA023356 | C_42 | 15 | Genotype:APP | Gender:M | Diet:AL |
| SA023357 | C_46 | 15 | Genotype:APP | Gender:M | Diet:AL |
| SA023358 | C_45 | 15 | Genotype:APP | Gender:M | Diet:AL |
| SA023359 | C_50 | 15 | Genotype:APP | Gender:M | Diet:CR |
| SA023360 | C_49 | 15 | Genotype:APP | Gender:M | Diet:CR |
| SA023361 | C_48 | 15 | Genotype:APP | Gender:M | Diet:CR |
| SA023362 | C_77 | 15 | Genotype:APP | Gender:M | Diet:CR |
| SA023363 | C_47 | 15 | Genotype:APP | Gender:M | Diet:CR |
| SA023364 | C_25 | 15 | Genotype:NTG | Gender:F | Diet:AL |
| SA023365 | C_27 | 15 | Genotype:NTG | Gender:F | Diet:AL |
| SA023366 | C_24 | 15 | Genotype:NTG | Gender:F | Diet:AL |
| SA023367 | C_26 | 15 | Genotype:NTG | Gender:F | Diet:AL |
| SA023368 | C_29 | 15 | Genotype:NTG | Gender:F | Diet:CR |
| SA023369 | C_30 | 15 | Genotype:NTG | Gender:F | Diet:CR |
| SA023370 | C_31 | 15 | Genotype:NTG | Gender:F | Diet:CR |
| SA023371 | C_28 | 15 | Genotype:NTG | Gender:F | Diet:CR |
| SA023372 | C_61 | 15 | Genotype:NTG | Gender:M | Diet:AL |
| SA023373 | C_64 | 15 | Genotype:NTG | Gender:M | Diet:AL |
| SA023374 | C_62 | 15 | Genotype:NTG | Gender:M | Diet:AL |
| SA023375 | C_63 | 15 | Genotype:NTG | Gender:M | Diet:AL |
| SA023376 | C_65 | 15 | Genotype:NTG | Gender:M | Diet:AL |
| SA023377 | C_68 | 15 | Genotype:NTG | Gender:M | Diet:CR |
| SA023378 | C_69 | 15 | Genotype:NTG | Gender:M | Diet:CR |
| SA023379 | C_66 | 15 | Genotype:NTG | Gender:M | Diet:CR |
| SA023380 | C_70 | 15 | Genotype:NTG | Gender:M | Diet:CR |
| SA023381 | C_67 | 15 | Genotype:NTG | Gender:M | Diet:CR |
| SA023382 | C_4 | 5 | Genotype:APP | Gender:F | Diet:AL |
| SA023383 | C_3 | 5 | Genotype:APP | Gender:F | Diet:AL |
| SA023384 | C_1 | 5 | Genotype:APP | Gender:F | Diet:AL |
| SA023385 | C_2 | 5 | Genotype:APP | Gender:F | Diet:AL |
| SA023386 | C_8 | 5 | Genotype:APP | Gender:F | Diet:CR |
| SA023387 | C_7 | 5 | Genotype:APP | Gender:F | Diet:CR |
| SA023388 | C_6 | 5 | Genotype:APP | Gender:F | Diet:CR |
| SA023389 | C_5 | 5 | Genotype:APP | Gender:F | Diet:CR |
| SA023390 | C_33 | 5 | Genotype:APP | Gender:M | Diet:AL |
| SA023391 | C_34 | 5 | Genotype:APP | Gender:M | Diet:AL |
| SA023392 | C_36 | 5 | Genotype:APP | Gender:M | Diet:AL |
| SA023393 | C_32 | 5 | Genotype:APP | Gender:M | Diet:AL |
| SA023394 | C_35 | 5 | Genotype:APP | Gender:M | Diet:AL |
| SA023395 | C_39 | 5 | Genotype:APP | Gender:M | Diet:CR |
| SA023396 | C_41 | 5 | Genotype:APP | Gender:M | Diet:CR |
| SA023397 | C_37 | 5 | Genotype:APP | Gender:M | Diet:CR |
| SA023398 | C_40 | 5 | Genotype:APP | Gender:M | Diet:CR |
| SA023399 | C_38 | 5 | Genotype:APP | Gender:M | Diet:CR |
| SA023400 | C_19 | 5 | Genotype:NTG | Gender:F | Diet:AL |
| SA023401 | C_18 | 5 | Genotype:NTG | Gender:F | Diet:AL |
| SA023402 | C_17 | 5 | Genotype:NTG | Gender:F | Diet:AL |
| SA023403 | C_21 | 5 | Genotype:NTG | Gender:F | Diet:CR |
| SA023404 | C_20 | 5 | Genotype:NTG | Gender:F | Diet:CR |
| SA023405 | C_22 | 5 | Genotype:NTG | Gender:F | Diet:CR |
| SA023406 | C_23 | 5 | Genotype:NTG | Gender:F | Diet:CR |
| SA023407 | C_53 | 5 | Genotype:NTG | Gender:M | Diet:AL |
| SA023408 | C_54 | 5 | Genotype:NTG | Gender:M | Diet:AL |
| SA023409 | C_51 | 5 | Genotype:NTG | Gender:M | Diet:AL |
| SA023410 | C_55 | 5 | Genotype:NTG | Gender:M | Diet:AL |
| SA023411 | C_52 | 5 | Genotype:NTG | Gender:M | Diet:AL |
| SA023412 | C_56 | 5 | Genotype:NTG | Gender:M | Diet:CR |
| SA023413 | C_57 | 5 | Genotype:NTG | Gender:M | Diet:CR |
| SA023414 | C_58 | 5 | Genotype:NTG | Gender:M | Diet:CR |
| SA023415 | C_60 | 5 | Genotype:NTG | Gender:M | Diet:CR |
| SA023416 | C_59 | 5 | Genotype:NTG | Gender:M | Diet:CR |
| SA023417 | CP_3 | Pool | Genotype:Pool | Gender:Pool | Diet:Pool |
| SA023418 | CP_2 | Pool | Genotype:Pool | Gender:Pool | Diet:Pool |
| SA023419 | CP_4 | Pool | Genotype:Pool | Gender:Pool | Diet:Pool |
| SA023420 | CP_6 | Pool | Genotype:Pool | Gender:Pool | Diet:Pool |
| SA023421 | CP_1 | Pool | Genotype:Pool | Gender:Pool | Diet:Pool |
| SA023422 | CP_5 | Pool | Genotype:Pool | Gender:Pool | Diet:Pool |
| Showing results 1 to 77 of 77 |
Collection:
| Collection ID: | CO000478 |
| Collection Summary: | Cecal pellets |
| Sample Type: | Brain |
Treatment:
| Treatment ID: | TR000498 |
| Treatment Summary: | Calorie restricted (CR) and ad libitum (AL) diets |
Sample Preparation:
| Sampleprep ID: | SP000491 |
| Sampleprep Summary: | Cecal samples were homogenized with HPLC grade water, and the final concentration of all of the extracts was 0.5 mg/µL. All 70 samples were included in an analytical quality control (QC) total pool. This total pool was created with 50 µL of each sample, which were divided into six replicates. A 250 µL aliquot of each sample and pool homogenate was filtered, and 225 µL of the filtrate was lyophilized. Lyophilized samples were reconstituted with 700 µL of Phosphate buffer with 0.5 mM DSS. Samples were vortexed and then centrifuged before transferring 600 µL of each sample into pre-labeled 5mm NMR tubes for data acquisition on a 700 MHz spectrometer. |
Analysis:
| Analysis ID: | AN000724 |
| Analysis Type: | NMR |
| Num Factors: | 17 |
NMR:
| NMR ID: | NM000081 |
| Analysis ID: | AN000724 |
| Instrument Name: | Bruker Avance III |
| Instrument Type: | FT-NMR |
| NMR Experiment Type: | 1D 1H |
| Spectrometer Frequency: | 700 MHz |
