Summary of Study ST000041

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000040. The data can be accessed directly via it's Project DOI: 10.21228/M8X59D This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  
Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data files (Contains raw data)
Study IDST000041
Study TitleHigh PUFA diet in humans
Study TypeMS
Study SummaryHuman subjects were given high PUFA diet for 21 days then converted to high carbohydrate diet for another 21 days. Plasma samples were drawn during the feeding process on 7 visits.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Email mkachman@umich.edu
Submit Date2014-03-22
Num Groups14
Total Subjects35
Raw Data AvailableYes
Raw Data File Type(s)d
Uploaded File Size12 G
Analysis Type DetailLC-MS
Release Date2014-04-21
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8X59D
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000040
Project DOI:doi: 10.21228/M8X59D
Project Title:Nutrition Studies
Project Type:MS study
Institute:University of Michigan
Department:Internal Medicine
Laboratory:Burant Lab
Last Name:Beecher
First Name:Chris
Email:chrisbee@med.umich.edu
Phone:734-232-0815

Subject:

Subject ID:SU000058
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Group Visit
SA001776S00001173Control 1
SA001777S00001166Control 1
SA001778S00001174Control 2
SA001779S00001167Control 2
SA001780S00001168Control 3
SA001781S00001175Control 3
SA001782S00001169Control 4
SA001783S00001176Control 4
SA001784S00001177Control 5
SA001785S00001170Control 5
SA001786S00001178Control 6
SA001787S00001171Control 6
SA001788S00001179Control 7
SA001789S00001172Control 7
SA001790S00001180NAFLD 1
SA001791S00001187NAFLD 1
SA001792S00001194NAFLD 1
SA001793S00001188NAFLD 2
SA001794S00001181NAFLD 2
SA001795S00001195NAFLD 2
SA001796S00001189NAFLD 3
SA001797S00001182NAFLD 3
SA001798S00001196NAFLD 3
SA001799S00001197NAFLD 4
SA001800S00001183NAFLD 4
SA001801S00001190NAFLD 4
SA001802S00001198NAFLD 5
SA001803S00001184NAFLD 5
SA001804S00001191NAFLD 5
SA001805S00001199NAFLD 6
SA001806S00001185NAFLD 6
SA001807S00001192NAFLD 6
SA001808S00001200NAFLD 7
SA001809S00001186NAFLD 7
SA001810S00001193NAFLD 7
Showing results 1 to 35 of 35

Collection:

Collection ID:CO000041
Collection Summary:-
Sample Type:Plasma

Treatment:

Treatment ID:TR000059

Sample Preparation:

Sampleprep ID:SP000054
Sampleprep Summary:-
Sampleprep Protocol Filename:Prep_Plasma_28OCT10_MeOH.pdf

Combined analysis:

Analysis ID AN000062 AN000063
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Agilent 1200 Agilent 1200
Column Waters Acquity HSS T3 Waters Acquity HSS T3
MS Type ESI ESI
MS instrument type QTOF QTOF
MS instrument name Agilent 6530 QTOF Agilent 6530 QTOF
Ion Mode NEGATIVE POSITIVE
Units Counts Counts

Chromatography:

Chromatography ID:CH000042
Methods ID:AQM003:AQM004
Methods Filename:Column1_jetstream_grad9.m.zip
Instrument Name:Agilent 1200
Column Name:Waters Acquity HSS T3
Chromatography Type:Reversed phase

MS:

MS ID:MS000043
Analysis ID:AN000062
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:NEGATIVE
Acquisition Parameters File:Column1_solv2_jetstream_neg_grad9.m.zip
Processing Parameters File:LCNegDataProcessing.m.zip
Analysis Protocol File:EX00051-Data_analysis_protocol.pdf
  
MS ID:MS000044
Analysis ID:AN000063
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:POSITIVE
Acquisition Parameters File:Column1_solv1_jetstream_pos_grad9.m.zip
Processing Parameters File:LCPosDataProcessing.m.zip
Analysis Protocol File:EX00051-Data_analysis_protocol.pdf
  logo