Summary of Study ST000043

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000042. The data can be accessed directly via it's Project DOI: 10.21228/M8NP46 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  
Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data files (Contains raw data)
Study IDST000043
Study TitleMDA-MB-231 cells and p38 gamma knockdown
Study SummaryCompare highly motile MDA-MB-231 breast cancer cells with less motile, yet highly proliferative gamma p38 knockdowns
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Email mkachman@umich.edu
Submit Date2014-03-22
Num Groups4
Total Subjects75
Raw Data AvailableYes
Raw Data File Type(s)d
Uploaded File Size5.9 G
Analysis Type DetailLC-MS
Release Date2014-04-21
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8NP46
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000042
Project DOI:doi: 10.21228/M8NP46
Project Title:Breast Cancer Research 1
Project Type:MS study
Project Summary:MDA-MB-231 cells and p38 gamma knockdown
Institute:University of Michigan
Department:Internal Medicine
Laboratory:Merajver Lab
Last Name:Merajver
First Name:Sophia
Address:University Michigan, 2900 Huron Parkway, Ann Arbor, MI 48105
Email:smerajve@med.umich.edu
Phone:(734)936-6884

Subject:

Subject ID:SU000062
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Mammals

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Cell line
SA001885S00008985MDA-MB-231
SA001886S00008986MDA-MB-231
SA001887S00008987MDA-MB-231
SA001888S00008979MDA-MB-231
SA001889S00008984MDA-MB-231
SA001890S00008988MDA-MB-231
SA001891S00008980MDA-MB-231
SA001892S00008983MDA-MB-231
SA001893S00008981MDA-MB-231
SA001894S00008982MDA-MB-231
SA001895S00009003MDA-MB-231 p38 gamma knockdown
SA001896S00009001MDA-MB-231 p38 gamma knockdown
SA001897S00009000MDA-MB-231 p38 gamma knockdown
SA001898S00009004MDA-MB-231 p38 gamma knockdown
SA001899S00009002MDA-MB-231 p38 gamma knockdown
SA001900S00009006MDA-MB-231 p38 gamma knockdown
SA001901S00008999MDA-MB-231 p38 gamma knockdown
SA001902S00009008MDA-MB-231 p38 gamma knockdown
SA001903S00009007MDA-MB-231 p38 gamma knockdown
SA001904S00009005MDA-MB-231 p38 gamma knockdown
SA001905S00008993MDA-MB-231 scrambled control
SA001906S00008991MDA-MB-231 scrambled control
SA001907S00008990MDA-MB-231 scrambled control
SA001908S00008989MDA-MB-231 scrambled control
SA001909S00008992MDA-MB-231 scrambled control
SA001910S00008994MDA-MB-231 scrambled control
SA001911S00008997MDA-MB-231 scrambled control
SA001912S00008996MDA-MB-231 scrambled control
SA001913S00008995MDA-MB-231 scrambled control
SA001914S00008998MDA-MB-231 scrambled control
Showing results 1 to 30 of 30

Collection:

Collection ID:CO000045
Collection Summary:-
Sample Type:Cells

Treatment:

Treatment ID:TR000063

Sample Preparation:

Sampleprep ID:SP000058
Sampleprep Summary:-
Sampleprep Protocol Filename:EX00107-Sample_preparation_protocol.pdf

Combined analysis:

Analysis ID AN000070 AN000071
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Agilent 1200 Agilent 1200
Column Waters Acquity HSS T3 Waters Acquity HSS T3
MS Type ESI ESI
MS instrument type QTOF QTOF
MS instrument name Agilent 6530 QTOF Agilent 6530 QTOF
Ion Mode POSITIVE NEGATIVE
Units Counts

Chromatography:

Chromatography ID:CH000046
Methods ID:AQM003:AQM004
Methods Filename:Column1_solv1_jetstream_pos_grad9.m.zip
Instrument Name:Agilent 1200
Column Name:Waters Acquity HSS T3
Chromatography Type:Reversed phase

MS:

MS ID:MS000051
Analysis ID:AN000070
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:POSITIVE
Acquisition Parameters File:Column1_solv1_jetstream_pos_grad9.m.zip
Processing Parameters File:RP-LC-P-FbF.m.zip
Analysis Protocol File:EX00107-Data_analysis_protocol.pdf
  
MS ID:MS000052
Analysis ID:AN000071
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:EX00107-Data_analysis_protocol.pdf
  logo