Summary of Study ST000044
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000043. The data can be accessed directly via it's Project DOI: 10.21228/M8J017 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST000044 |
| Study Title | Pilot experiment looking for the existence of certain molecules in pancreatic cancer cells |
| Study Summary | Pilot experiment looking for the existence of certain molecules in pancreatic cancer cells |
| Institute | University of Michigan |
| Department | Biomedical Research Core Facilities |
| Laboratory | Metabolomics core |
| Last Name | Kachman |
| First Name | Maureen |
| Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
| mkachman@umich.edu | |
| Submit Date | 2014-03-22 |
| Num Groups | 3 |
| Total Subjects | 6 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | d |
| Uploaded File Size | 2.1 G |
| Analysis Type Detail | LC-MS |
| Release Date | 2014-04-21 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR000043 |
| Project DOI: | doi: 10.21228/M8J017 |
| Project Title: | Pancreas Cancer Studies |
| Project Type: | MS study |
| Project Summary: | Studies with Pancreatic cancer tissues |
| Institute: | University of Michigan |
| Department: | Internal Medicine |
| Laboratory: | Burant Lab |
| Last Name: | Beecher |
| First Name: | Chris |
| Email: | chrisbee@med.umich.edu |
| Phone: | 734-232-0815 |
Subject:
| Subject ID: | SU000061 |
| Subject Type: | Human |
| Subject Species: | Homo sapiens |
| Taxonomy ID: | 9606 |
| Species Group: | Human |
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | Pancreas tissue type |
|---|---|---|
| SA001879 | S00010704 | Normal area of the pancreas with tumor |
| SA001880 | S00010702 | Normal area of the pancreas with tumor |
| SA001881 | S00010705 | Normal pancreas |
| SA001882 | S00010706 | Normal pancreas |
| SA001883 | S00010703 | Pancreas tumor |
| SA001884 | S00010701 | Pancreas tumor |
| Showing results 1 to 6 of 6 |
Collection:
| Collection ID: | CO000044 |
| Collection Summary: | - |
| Sample Type: | Tissues |
Treatment:
| Treatment ID: | TR000062 |
Sample Preparation:
| Sampleprep ID: | SP000057 |
| Sampleprep Summary: | - |
| Sampleprep Protocol Filename: | EX00189-Sample_preparation_protocol.pdf |
Combined analysis:
| Analysis ID | AN000068 | AN000069 |
|---|---|---|
| Analysis type | MS | MS |
| Chromatography type | Reversed phase | Reversed phase |
| Chromatography system | Agilent 1200 | Agilent 1200 |
| Column | Waters Acquity HSS T3 | Waters Acquity HSS T3 |
| MS Type | ESI | ESI |
| MS instrument type | QTOF | QTOF |
| MS instrument name | Agilent 6530 QTOF | Agilent 6530 QTOF |
| Ion Mode | POSITIVE | NEGATIVE |
| Units | Counts | Counts |
Chromatography:
| Chromatography ID: | CH000045 |
| Methods ID: | AQM003:AQM004 |
| Methods Filename: | Column1_jetstream_grad9.m.zip |
| Instrument Name: | Agilent 1200 |
| Column Name: | Waters Acquity HSS T3 |
| Chromatography Type: | Reversed phase |
MS:
| MS ID: | MS000049 |
| Analysis ID: | AN000068 |
| Instrument Name: | Agilent 6530 QTOF |
| Instrument Type: | QTOF |
| MS Type: | ESI |
| Ion Mode: | POSITIVE |
| Acquisition Parameters File: | Column1_solv1_jetstream_pos_grad9.m.zip |
| Processing Parameters File: | LCPosDataProcessing.m |
| Analysis Protocol File: | EX00189-Data analysis protocol.pdf |
| MS ID: | MS000050 |
| Analysis ID: | AN000069 |
| Instrument Name: | Agilent 6530 QTOF |
| Instrument Type: | QTOF |
| MS Type: | ESI |
| Ion Mode: | NEGATIVE |
| Acquisition Parameters File: | Column1_solv2_jetstream_neg_grad9.m.zip |
| Processing Parameters File: | LCNegDataProcessing.m |
| Analysis Protocol File: | EX00189-Data analysis protocol.pdf |
