Summary of Study ST000057
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000054. The data can be accessed directly via it's Project DOI: 10.21228/M87G65 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST000057 |
Study Title | Combined Metabolomics and Lipidomics of Type 1 Diabetes (GCMS) |
Study Type | biomarker study |
Study Summary | This West Coast Metabolomics Center pilot and feasibility project granted to Graeme Bell (University of Chicago) and collaborator Manami Hara uses a multi-omics approach to investigate the metabolome (primary metabolites), lipidome (complex lipids) and signaling lipids (oxylipins) in the plasma of Non-obese Diabetic (NOD) mice which progressed to Type 1 Diabetes Mellitus (T1D) and those that did not. NOD Mice (n=71) were assessed as diabetic or non-diabetic based on their fasting (4hr) blood glucose levels at sacrifice, which defined 30 hyperglycemic (glucose = 250 mg/dL) and 41 normoglycemic animals. The primary objective of this study was to identify candidate biomarkers associated with beta-cell destruction/survival and T1D progression. |
Institute | University of California, Davis |
Department | Genome and Biomedical Sciences Facility |
Laboratory | WCMC Metabolomics Core |
Last Name | Fiehn |
First Name | Oliver |
Address | 1315 Genome and Biomedical Sciences Facility 451 Health Sciences Drive Davis, CA 95616 |
ofiehn@ucdavis.edu | |
Phone | (530) 754-8258 |
Submit Date | 2014-06-11 |
Num Groups | 8 |
Total Subjects | 75 |
Raw Data Available | Yes |
Raw Data File Type(s) | cdf |
Uploaded File Size | 4.6 G |
Analysis Type Detail | GC-MS |
Release Date | 2017-12-14 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000054 |
Project DOI: | doi: 10.21228/M87G65 |
Project Title: | Combined Metabolomics and Lipidomics of Type 1 Diabetes |
Project Type: | MS study |
Project Summary: | This West Coast Metabolomics Center pilot and feasibility project granted to Graeme Bell (University of Chicago) and collaborator Manami Hara uses a multi-omics approach to investigate the metabolome (primary metabolites), lipidome (complex lipids) and signaling lipids (oxylipins) in the plasma of Non-obese Diabetic (NOD) mice which progressed to Type 1 Diabetes Mellitus (T1D) and those that did not. NOD Mice (n=71) were assessed as diabetic or non-diabetic based on their fasting (4hr) blood glucose levels at sacrifice, which defined 30 hyperglycemic (glucose = 250 mg/dL) and 41 normoglycemic animals. The primary objective of this study was to identify candidate biomarkers associated with beta-cell destruction/survival and T1D progression. |
Institute: | University of California, Davis |
Department: | Genome and Biomedical Sciences Facility |
Laboratory: | WCMC Metabolomics Core |
Last Name: | Fiehn |
First Name: | Oliver |
Address: | 1315 Genome and Biomedical Sciences Facility,451 Health Sciences Drive, Davis, CA 95616 |
Email: | ofiehn@ucdavis.edu |
Phone: | (530) 754-8258 |
Funding Source: | NIH U24DK097154 |
Subject:
Subject ID: | SU000076 |
Subject Type: | Animal |
Subject Species: | Mus musculus |
Taxonomy ID: | 10090 |
Species Group: | Mammals |
Factors:
Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)
mb_sample_id | local_sample_id | Diagnosis |
---|---|---|
SA003012 | 131125dlvsa13_1 | Diabetic |
SA003013 | 131124dlvsa10_1 | Diabetic |
SA003014 | 131125dlvsa10_1 | Diabetic |
SA003015 | 131125dlvsa11_1 | Diabetic |
SA003016 | 131124dlvsa36_1 | Diabetic |
SA003017 | 131124dlvsa48_1 | Diabetic |
SA003018 | 131124dlvsa41_1 | Diabetic |
SA003019 | 131124dlvsa05_2 | Diabetic |
SA003020 | 131124dlvsa12_1 | Diabetic |
SA003021 | 131124dlvsa16_1 | Diabetic |
SA003022 | 131124dlvsa23_1 | Diabetic |
SA003023 | 131124dlvsa17_1 | Diabetic |
SA003024 | 131125dlvsa05_1 | Diabetic |
SA003025 | 131124dlvsa34_1 | Diabetic |
SA003026 | 131124dlvsa30_1 | Diabetic |
SA003027 | 131124dlvsa40_1 | Diabetic |
SA003028 | 131124dlvsa28_1 | Diabetic |
SA003029 | 131124dlvsa08_1 | Diabetic |
SA003030 | 131125dlvsa20_1 | Diabetic |
SA003031 | 131124dlvsa15_2 | Diabetic |
SA003032 | 131125dlvsa12_1 | Diabetic |
SA003033 | 131124dlvsa19_1 | Diabetic |
SA003034 | 131124dlvsa06_1 | Diabetic |
SA003035 | 131124dlvsa32_1 | Diabetic |
SA003036 | 131124dlvsa35_1 | Diabetic |
SA003037 | 131124dlvsa14_1 | Diabetic |
SA003038 | 131124dlvsa44_1 | Diabetic |
SA003039 | 131125dlvsa19_1 | Diabetic |
SA003040 | 131124dlvsa11_2 | Diabetic |
SA003041 | 131124dlvsa03_1 | Diabetic |
SA002971 | 131124dlvsa24_1 | Non-diabetic |
SA002972 | 131124dlvsa25_1 | Non-diabetic |
SA002973 | 131125dlvsa14_1 | Non-diabetic |
SA002974 | 131124dlvsa43_1 | Non-diabetic |
SA002975 | 131125dlvsa09_1 | Non-diabetic |
SA002976 | 131125dlvsa16_1 | Non-diabetic |
SA002977 | 131124dlvsa42_1 | Non-diabetic |
SA002978 | 131124dlvsa37_1 | Non-diabetic |
SA002979 | 131124dlvsa45_1 | Non-diabetic |
SA002980 | 131125dlvsa01_1 | Non-diabetic |
SA002981 | 131125dlvsa15_1 | Non-diabetic |
SA002982 | 131124dlvsa26_1 | Non-diabetic |
SA002983 | 131124dlvsa33_1 | Non-diabetic |
SA002984 | 131124dlvsa02_1 | Non-diabetic |
SA002985 | 131125dlvsa18_1 | Non-diabetic |
SA002986 | 131124dlvsa46_1 | Non-diabetic |
SA002987 | 131125dlvsa03_1 | Non-diabetic |
SA002988 | 131124dlvsa21_1 | Non-diabetic |
SA002989 | 131124dlvsa09_1 | Non-diabetic |
SA002990 | 131124dlvsa38_1 | Non-diabetic |
SA002991 | 131124dlvsa13_1 | Non-diabetic |
SA002992 | 131124dlvsa20_1 | Non-diabetic |
SA002993 | 131124dlvsa01_1 | Non-diabetic |
SA002994 | 131125dlvsa08_1 | Non-diabetic |
SA002995 | 131124dlvsa18_1 | Non-diabetic |
SA002996 | 131125dlvsa04_1 | Non-diabetic |
SA002997 | 131124dlvsa29_1 | Non-diabetic |
SA002998 | 131124dlvsa50_1 | Non-diabetic |
SA002999 | 131124dlvsa39_1 | Non-diabetic |
SA003000 | 131125dlvsa07_1 | Non-diabetic |
SA003001 | 131125dlvsa02_1 | Non-diabetic |
SA003002 | 131125dlvsa21_1 | Non-diabetic |
SA003003 | 131124dlvsa31_2 | Non-diabetic |
SA003004 | 131124dlvsa04_1 | Non-diabetic |
SA003005 | 131125dlvsa17_1 | Non-diabetic |
SA003006 | 131124dlvsa47_1 | Non-diabetic |
SA003007 | 131125dlvsa06_1 | Non-diabetic |
SA003008 | 131124dlvsa22_1 | Non-diabetic |
SA003009 | 131124dlvsa07_1 | Non-diabetic |
SA003010 | 131124dlvsa27_1 | Non-diabetic |
SA003011 | 131124dlvsa49_1 | Non-diabetic |
Showing results 1 to 71 of 71 |
Collection:
Collection ID: | CO000059 |
Collection Summary: | - |
Treatment:
Treatment ID: | TR000077 |
Sample Preparation:
Sampleprep ID: | SP000072 |
Sampleprep Summary: | - |
Sampleprep Protocol Filename: | Data_Dictionary_Fiehn_laboratory_GCTOF_MS_primary_metabolism_10-15-2013_general.pdf |
Sample Spiking: | FAMEs |
Combined analysis:
Analysis ID | AN000095 |
---|---|
Analysis type | MS |
Chromatography type | GC |
Chromatography system | Agilent 6890N |
Column | Restek Corporation Rtx-5Sil MS |
MS Type | EI |
MS instrument type | GC-TOF |
MS instrument name | Leco GC-TOF |
Ion Mode | POSITIVE |
Units | Peak area |
Chromatography:
Chromatography ID: | CH000063 |
Methods Filename: | Data_Dictionary_Fiehn_laboratory_GCTOF_MS_primary_metabolism_10-15-2013_general.pdf |
Instrument Name: | Agilent 6890N |
Column Name: | Restek Corporation Rtx-5Sil MS |
Column Pressure: | 7.7 PSI (initial condition) |
Column Temperature: | 50 - 330C |
Flow Rate: | 1 ml/min |
Injection Temperature: | 50C ramped to 250C by 12C/s |
Sample Injection: | 0.5l |
Oven Temperature: | 50C for 1 min, then ramped at 20C/min to 330C, held constant for 5 min |
Transferline Temperature: | 230C |
Washing Buffer: | Ethyl Acetate |
Sample Loop Size: | 30 m length x 0.25 mm internal diameter |
Randomization Order: | Excel generated |
Chromatography Type: | GC |
MS:
MS ID: | MS000071 |
Analysis ID: | AN000095 |
Instrument Name: | Leco GC-TOF |
Instrument Type: | GC-TOF |
MS Type: | EI |
Ion Mode: | POSITIVE |
Ion Source Temperature: | 250°C |
Ionization Energy: | 70eV |
Mass Accuracy: | Nominal |
Source Temperature: | 250°C |
Scanning Range: | 80-500 Da |
Acquisition Parameters File: | Data_Dictionary_Fiehn_laboratory_GCTOF_MS_primary_metabolism_10-15-2013_general.pdf |
Processing Parameters File: | Data_Dictionary_Fiehn_laboratory_GCTOF_MS_primary_metabolism_10-15-2013_general.pdf |