Summary of Study ST000158
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000137. The data can be accessed directly via it's Project DOI: 10.21228/M8859H This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST000158 |
| Study Title | Human fecal bile acid profiles before and after fecal transplant |
| Study Summary | Understand the bile acid profiles from the feces of fecal microbiota transplant FMT patients that successfully recover from recurrent C. difficile infection. The assay is intended to generate the profile of central metabolism, including glycolysis, pentose-phosphate shunt, TCA cycle and nucleotide pools. |
| Institute | University of Michigan |
| Department | Biomedical Research Core Facilities |
| Laboratory | Metabolomics core |
| Last Name | Kachman |
| First Name | Maureen |
| Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
| mkachman@umich.edu | |
| Submit Date | 2014-12-03 |
| Num Groups | 8 |
| Total Subjects | 46 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | d |
| Uploaded File Size | 444 M |
| Analysis Type Detail | LC-MS |
| Release Date | 2016-06-18 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR000137 |
| Project DOI: | doi: 10.21228/M8859H |
| Project Title: | Fecal Transplant Studies |
| Project Summary: | Alterations in fecal bile acids before and after fecal transplant |
| Institute: | University of Michigan |
| Department: | Int Med-Infectious Diseases |
| Laboratory: | Theriot Lab |
| Last Name: | Theriot |
| First Name: | Casey |
| Address: | Ann Arbor, MI |
| Email: | caseythe@umich.edu |
| Phone: | 734-763-4133 |
Subject:
| Subject ID: | SU000177 |
| Subject Type: | Human |
| Subject Species: | Homo sapiens |
| Taxonomy ID: | 9606 |
| Species Group: | Mammals |
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | Patient |
|---|---|---|
| SA008501 | S00016909 | donor |
| SA008502 | S00016913 | donor |
| SA008503 | S00016911 | donor |
| SA008504 | S00016897 | donor homogenized |
| SA008505 | S00016890 | donor homogenized |
| SA008506 | S00016905 | donor homogenized |
| SA008507 | S00016882 | donor homogenized |
| SA008508 | S00016883 | donor non-homogenized |
| SA008509 | S00016898 | donor non-homogenized |
| SA008510 | S00016906 | donor non-homogenized |
| SA008511 | S00016891 | donor non-homogenized |
| SA008512 | S00016934 | dudenum |
| SA008513 | S00016933 | dudenum |
| SA008514 | S00016932 | dudenum |
| SA008515 | S00016935 | dudenum |
| SA008516 | S00016936 | jejunum |
| SA008517 | S00016912 | post-FMT |
| SA008518 | S00016914 | post-FMT |
| SA008519 | S00016902 | post-FMT |
| SA008520 | S00016910 | post-FMT |
| SA008521 | S00016904 | post-FMT |
| SA008522 | S00016915 | post-FMT |
| SA008523 | S00016901 | post-FMT |
| SA008524 | S00016903 | post-FMT |
| SA008525 | S00016894 | post-FMT |
| SA008526 | S00016881 | post-FMT |
| SA008527 | S00016880 | post-FMT |
| SA008528 | S00016879 | post-FMT |
| SA008529 | S00016896 | post-FMT |
| SA008530 | S00016886 | post-FMT |
| SA008531 | S00016895 | post-FMT |
| SA008532 | S00016889 | post-FMT |
| SA008533 | S00016888 | post-FMT |
| SA008534 | S00016887 | post-FMT |
| SA008535 | S00016938 | pre-FMT |
| SA008536 | S00016937 | pre-FMT |
| SA008537 | S00016899 | pre-FMT |
| SA008538 | S00016885 | pre-FMT |
| SA008539 | S00016884 | pre-FMT |
| SA008540 | S00016878 | pre-FMT |
| SA008541 | S00016892 | pre-FMT |
| SA008542 | S00016893 | pre-FMT |
| SA008543 | S00016907 | pre-FMT |
| SA008544 | S00016900 | pre-FMT |
| SA008545 | S00016877 | pre-FMT |
| SA008546 | S00016908 | pre-FMT |
| Showing results 1 to 46 of 46 |
Collection:
| Collection ID: | CO000163 |
| Collection Summary: | - |
| Sample Type: | Serum |
Treatment:
| Treatment ID: | TR000183 |
Sample Preparation:
| Sampleprep ID: | SP000177 |
| Sampleprep Summary: | - |
| Sampleprep Protocol Filename: | Bile-acids-2015-03-11.docx |
Combined analysis:
| Analysis ID | AN000250 |
|---|---|
| Analysis type | MS |
| Chromatography type | Reversed phase |
| Chromatography system | Agilent 1260 |
| Column | Waters Acquity BEH C18 (50 x 2mm,1.7um) |
| MS Type | ESI |
| MS instrument type | QTOF |
| MS instrument name | Agilent 6520 QTOF |
| Ion Mode | NEGATIVE |
| Units | mg/100mg (fecal), and mg/ml (serum, duodenum) |
Chromatography:
| Chromatography ID: | CH000175 |
| Methods ID: | AQM030 |
| Methods Filename: | 2014-07-30-Bile_acid-full-BEH-C18-I_insert.m.zip |
| Instrument Name: | Agilent 1260 |
| Column Name: | Waters Acquity BEH C18 (50 x 2mm,1.7um) |
| Chromatography Type: | Reversed phase |
MS:
| MS ID: | MS000200 |
| Analysis ID: | AN000250 |
| Instrument Name: | Agilent 6520 QTOF |
| Instrument Type: | QTOF |
| MS Type: | ESI |
| Ion Mode: | NEGATIVE |
| Acquisition Parameters File: | 2014-07-30-Bile_acid-full-BEH-C18-I_insert.m.zip |
| Processing Parameters File: | EX00382-BileAcids-Quant-method.m.zip |
