Summary of Study ST000192
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000163. The data can be accessed directly via it's Project DOI: 10.21228/M85887 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST000192 |
| Study Title | TRF Microbiome Study NA/FA/FT/CDKO 4-14 |
| Study Summary | This is a time restricted feeding study (see M Hatori, et al. Cell Metabolism (2012), 15(6), 848-860). Briefly, there are four groups of mice: (1) NA mice are on a normal chow ad libitum diet; (2) FA mice are on a high fat ad libitum diet (i.e. Diet induced obesity); (3) FT mice are on a high fat time restricted diet (i.e. only eat for 8 hours/day and fast for 16); and (4) CDKO mice which are cry knock out mice on a normal chow ad libitum diet. We have collected stool from these four groups while they are in the light and in the dark. Our expectation is that their stool metabolites will be different at different times of the day. |
| Institute | University of Michigan |
| Department | Biomedical Research Core Facilities |
| Laboratory | Metabolomics core |
| Last Name | Kachman |
| First Name | Maureen |
| Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
| mkachman@umich.edu | |
| Submit Date | 2015-06-08 |
| Num Groups | 8 |
| Total Subjects | 31 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | d |
| Uploaded File Size | 64 M |
| Analysis Type Detail | LC-MS |
| Release Date | 2015-12-28 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR000163 |
| Project DOI: | doi: 10.21228/M85887 |
| Project Title: | Time Restricted Microbiome Studies |
| Project Summary: | Study Time Restricted Microbiomes |
| Institute: | University of California, San Diego |
| Department: | Gastroenterology/Internal Medicine |
| Laboratory: | Zarrinpar Lab |
| Last Name: | Zarrinpar |
| First Name: | Amir |
| Address: | San Diego, CA |
| Email: | azarrinp@ucsd.edu |
| Phone: | 858-442-1359 |
Subject:
| Subject ID: | SU000211 |
| Subject Type: | Animal |
| Subject Species: | Mus musculus |
| Taxonomy ID: | 10090 |
| Species Group: | Mammal |
Factors:
Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)
| mb_sample_id | local_sample_id | Time Restriction | diurnal cycle | Diet | mouse strain |
|---|---|---|---|---|---|
| SA009717 | S00014230 | ad libitum | day | high fat | BKGND |
| SA009718 | S00014232 | ad libitum | day | high fat | BKGND |
| SA009719 | S00014231 | ad libitum | day | high fat | BKGND |
| SA009720 | S00014233 | ad libitum | day | high fat | BKGND |
| SA009721 | S00014225 | ad libitum | day | normal | BKGND |
| SA009722 | S00014223 | ad libitum | day | normal | BKGND |
| SA009723 | S00014224 | ad libitum | day | normal | BKGND |
| SA009724 | S00014222 | ad libitum | day | normal | BKGND |
| SA009725 | S00014246 | ad libitum | day | normal | CDKO |
| SA009726 | S00014247 | ad libitum | day | normal | CDKO |
| SA009727 | S00014245 | ad libitum | day | normal | CDKO |
| SA009728 | S00014248 | ad libitum | day | normal | CDKO |
| SA009729 | S00014236 | ad libitum | night | high fat | BKGND |
| SA009730 | S00014237 | ad libitum | night | high fat | BKGND |
| SA009731 | S00014235 | ad libitum | night | high fat | BKGND |
| SA009732 | S00014234 | ad libitum | night | high fat | BKGND |
| SA009733 | S00014228 | ad libitum | night | normal | BKGND |
| SA009734 | S00014229 | ad libitum | night | normal | BKGND |
| SA009735 | S00014226 | ad libitum | night | normal | BKGND |
| SA009736 | S00014227 | ad libitum | night | normal | BKGND |
| SA009737 | S00014249 | ad libitum | night | normal | CDKO |
| SA009738 | S00014252 | ad libitum | night | normal | CDKO |
| SA009739 | S00014251 | ad libitum | night | normal | CDKO |
| SA009740 | S00014250 | ad libitum | night | normal | CDKO |
| SA009741 | S00014238 | time restricted | day | high fat | BKGND |
| SA009742 | S00014239 | time restricted | day | high fat | BKGND |
| SA009743 | S00014241 | time restricted | day | high fat | BKGND |
| SA009744 | S00014240 | time restricted | day | high fat | BKGND |
| SA009745 | S00014244 | time restricted | night | high fat | BKGND |
| SA009746 | S00014242 | time restricted | night | high fat | BKGND |
| SA009747 | S00014243 | time restricted | night | high fat | BKGND |
| Showing results 1 to 31 of 31 |
Collection:
| Collection ID: | CO000199 |
| Collection Summary: | - |
| Sample Type: | Feces |
Treatment:
| Treatment ID: | TR000219 |
Sample Preparation:
| Sampleprep ID: | SP000213 |
| Sampleprep Summary: | - |
| Sampleprep Protocol Filename: | Bile-acids-2015-03-11.docx |
Combined analysis:
| Analysis ID | AN000294 |
|---|---|
| Analysis type | MS |
| Chromatography type | |
| Chromatography system | |
| Column | |
| MS Type | ESI |
| MS instrument type | Triple quadrupole |
| MS instrument name | Agilent 6490 QQQ |
| Ion Mode | NEGATIVE |
| Units | pmol/mg sample |
Chromatography:
| Chromatography ID: | CH000215 |
| Methods ID: | AQM040 |
| Methods Filename: | 2014-03-27-Bile_acid-full-ESN-insert.m.zip |
MS:
| MS ID: | MS000243 |
| Analysis ID: | AN000294 |
| Instrument Name: | Agilent 6490 QQQ |
| Instrument Type: | Triple quadrupole |
| MS Type: | ESI |
| Ion Mode: | NEGATIVE |
| Acquisition Parameters File: | 2014-03-27-Bile_acid-full-ESN-insert.m.zip |
| Processing Parameters File: | EX00278-Bile-Acids-Quant-method.m.zip |
