Summary of Study ST000203
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000171. The data can be accessed directly via it's Project DOI: 10.21228/M8HG6N This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST000203 |
| Study Title | Germfree vs Conventional Swiss webster mice Studies |
| Study Type | Short-chain fatty acid analysis |
| Study Summary | The intestinal tract is inhabited by a large and diverse community of microbes collectively referred to as the gut microbiota. While the gut microbiota provides important benefits to its host, especially in metabolism and immune development, disturbance of the microbiota–host relationship is associated with numerous chronic inflammatory diseases, including inflammatory bowel disease and the group of obesity-associated diseases collectively referred to as metabolic syndrome. A primary means by which the intestine is protected from its microbiota is via multi-layered mucus structures that cover the intestinal surface, thereby allowing the vast majority of gut bacteria to be kept at a safe distance from epithelial cells that line the intestine1. Thus, agents that disrupt mucus–bacterial interactions might have the potential to promote diseases associated with gut inflammation. Consequently, it has been hypothesized that emulsifiers, detergent-like molecules that are a ubiquitous component of processed foods and that can increase bacterial translocation across epithelia in vitro2, might be promoting the increase in inflammatory bowel disease observed since the mid-twentieth century3. Here we report that, in mice, relatively low concentrations of two commonly used emulsifiers, namely carboxymethylcellulose and polysorbate-80, induced low-grade inflammation and obesity/metabolic syndrome in wild-type hosts and promoted robust colitis in mice predisposed to this disorder. Emulsifier-induced metabolic syndrome was associated with microbiota encroachment, altered species composition and increased pro-inflammatory potential. Use of germ-free mice and faecal transplants indicated that such changes in microbiota were necessary and sufficient for both low-grade inflammation and metabolic syndrome. These results support the emerging concept that perturbed host–microbiota interactions resulting in low-grade inflammation can promote adiposity and its associated metabolic effects. Moreover, they suggest that the broad use of emulsifying agents might be contributing to an increased societal incidence of obesity/metabolic syndrome and other chronic inflammatory diseases. In Study Design factor “Treatment” CMC stands for carboxymethylcellulose and P80 for polysorbate-80 Research is published: http://www.nature.com/nature/journal/v519/n7541/full/nature14232.html |
| Institute | University of Michigan |
| Department | Biomedical Research Core Facilities |
| Laboratory | Metabolomics core |
| Last Name | Kachman |
| First Name | Maureen |
| Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
| mkachman@umich.edu | |
| Submit Date | 2015-06-11 |
| Num Groups | 6 |
| Total Subjects | 66 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | d |
| Uploaded File Size | 2.3 M |
| Analysis Type Detail | GC-MS |
| Release Date | 2015-12-28 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR000171 |
| Project DOI: | doi: 10.21228/M8HG6N |
| Project Title: | Dietary emulsifying agents |
| Project Summary: | SCFA and Bile acid composition in conventional and GermFree SW treated with emulsifiers |
| Institute: | Georgia State University |
| Department: | Biology |
| Laboratory: | Gewirtz's Lab |
| Last Name: | Gewirtz |
| First Name: | Andrew |
| Address: | 14 Marietta Street, NW Atlanta, GA 30303-2813 |
| Email: | bchassaing@gsu.edu |
| Phone: | 404-413-3589 |
Subject:
| Subject ID: | SU000222 |
| Subject Type: | Animal |
| Subject Species: | Mus musculus |
| Taxonomy ID: | 10090 |
| Species Group: | Mammals |
Factors:
Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)
| mb_sample_id | local_sample_id | treatment | Germfree versus conventional |
|---|---|---|---|
| SA010129 | S00012779 | CMC | Conventionaly raised animal |
| SA010130 | S00012780 | CMC | Conventionaly raised animal |
| SA010131 | S00012778 | CMC | Conventionaly raised animal |
| SA010132 | S00012813 | CMC | Conventionaly raised animal |
| SA010133 | S00012814 | CMC | Conventionaly raised animal |
| SA010134 | S00012781 | CMC | Conventionaly raised animal |
| SA010135 | S00012782 | CMC | Conventionaly raised animal |
| SA010136 | S00012812 | CMC | Conventionaly raised animal |
| SA010137 | S00012811 | CMC | Conventionaly raised animal |
| SA010138 | S00012785 | CMC | Conventionaly raised animal |
| SA010139 | S00012784 | CMC | Conventionaly raised animal |
| SA010140 | S00012783 | CMC | Conventionaly raised animal |
| SA010141 | S00012816 | CMC | Conventionaly raised animal |
| SA010142 | S00012815 | CMC | Conventionaly raised animal |
| SA010143 | S00012817 | CMC | Conventionaly raised animal |
| SA010144 | S00012818 | CMC | Conventionaly raised animal |
| SA010145 | S00012765 | CMC | Germfree animal |
| SA010146 | S00012764 | CMC | Germfree animal |
| SA010147 | S00012799 | CMC | Germfree animal |
| SA010148 | S00012798 | CMC | Germfree animal |
| SA010149 | S00012800 | CMC | Germfree animal |
| SA010150 | S00012766 | CMC | Germfree animal |
| SA010151 | S00012767 | CMC | Germfree animal |
| SA010152 | S00012797 | CMC | Germfree animal |
| SA010153 | S00012820 | P80 | Conventionaly raised animal |
| SA010154 | S00012819 | P80 | Conventionaly raised animal |
| SA010155 | S00012825 | P80 | Conventionaly raised animal |
| SA010156 | S00012824 | P80 | Conventionaly raised animal |
| SA010157 | S00012822 | P80 | Conventionaly raised animal |
| SA010158 | S00012821 | P80 | Conventionaly raised animal |
| SA010159 | S00012823 | P80 | Conventionaly raised animal |
| SA010160 | S00012792 | P80 | Conventionaly raised animal |
| SA010161 | S00012788 | P80 | Conventionaly raised animal |
| SA010162 | S00012791 | P80 | Conventionaly raised animal |
| SA010163 | S00012789 | P80 | Conventionaly raised animal |
| SA010164 | S00012787 | P80 | Conventionaly raised animal |
| SA010165 | S00012786 | P80 | Conventionaly raised animal |
| SA010166 | S00012790 | P80 | Conventionaly raised animal |
| SA010167 | S00012804 | P80 | Germfree animal |
| SA010168 | S00012805 | P80 | Germfree animal |
| SA010169 | S00012772 | P80 | Germfree animal |
| SA010170 | S00012803 | P80 | Germfree animal |
| SA010171 | S00012802 | P80 | Germfree animal |
| SA010172 | S00012768 | P80 | Germfree animal |
| SA010173 | S00012769 | P80 | Germfree animal |
| SA010174 | S00012770 | P80 | Germfree animal |
| SA010175 | S00012771 | P80 | Germfree animal |
| SA010176 | S00012801 | P80 | Germfree animal |
| SA010177 | S00012776 | Water | Conventionaly raised animal |
| SA010178 | S00012773 | Water | Conventionaly raised animal |
| SA010179 | S00012777 | Water | Conventionaly raised animal |
| SA010180 | S00012774 | Water | Conventionaly raised animal |
| SA010181 | S00012775 | Water | Conventionaly raised animal |
| SA010182 | S00012808 | Water | Conventionaly raised animal |
| SA010183 | S00012810 | Water | Conventionaly raised animal |
| SA010184 | S00012806 | Water | Conventionaly raised animal |
| SA010185 | S00012807 | Water | Conventionaly raised animal |
| SA010186 | S00012809 | Water | Conventionaly raised animal |
| SA010187 | S00012763 | Water | Germfree animal |
| SA010188 | S00012762 | Water | Germfree animal |
| SA010189 | S00012793 | Water | Germfree animal |
| SA010190 | S00012761 | Water | Germfree animal |
| SA010191 | S00012796 | Water | Germfree animal |
| SA010192 | S00012760 | Water | Germfree animal |
| SA010193 | S00012795 | Water | Germfree animal |
| SA010194 | S00012794 | Water | Germfree animal |
| Showing results 1 to 66 of 66 |
Collection:
| Collection ID: | CO000210 |
| Collection Summary: | - |
| Sample Type: | Face |
Treatment:
| Treatment ID: | TR000230 |
| Treatment Summary: | In Study Design factor “Treatment” CMC stands for carboxymethylcellulose and P80 for polysorbate-80 |
Sample Preparation:
| Sampleprep ID: | SP000224 |
| Sampleprep Summary: | - |
| Sampleprep Protocol Filename: | SCFA_analysis_protocol-2015-03-10.docx |
Combined analysis:
| Analysis ID | AN000305 |
|---|---|
| Analysis type | MS |
| Chromatography type | GC |
| Chromatography system | |
| Column | Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um) |
| MS Type | EI |
| MS instrument type | Single quadrupole |
| MS instrument name | Agilent 5975C |
| Ion Mode | POSITIVE |
| Units | nmol/100 mg sample |
Chromatography:
| Chromatography ID: | CH000226 |
| Methods ID: | AQM030 |
| Methods Filename: | WAXPLUS_100-200C_2_SIM.M.txt |
| Column Name: | Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um) |
| Chromatography Type: | GC |
MS:
| MS ID: | MS000254 |
| Analysis ID: | AN000305 |
| Instrument Name: | Agilent 5975C |
| Instrument Type: | Single quadrupole |
| MS Type: | EI |
| Ion Mode: | POSITIVE |
| Acquisition Parameters File: | WAXPLUS_100-200C_2_SIM.M.txt |
| Processing Parameters File: | EX00249-SCFA-Quant-methods.m.zip |
