Summary of Study ST000206

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000174. The data can be accessed directly via it's Project DOI: 10.21228/M8830D This work is supported by NIH grant, U2C- DK119886.

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Study IDST000206
Study TitleMice inoculation with human microbiota (AMY1.1SCFA)
Study TypeShort-chain fatty acid analysis
Study SummaryThe goal of the study is to evaluate the influence of salivary amylase 1 (AMY1) gene expression on the composition of blood plasma and cecal matter in mice.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Email mkachman@umich.edu
Submit Date2015-06-11
Num Groups19
Total Subjects19
Raw Data AvailableYes
Raw Data File Type(s)d
Uploaded File Size8.0 M
Analysis Type DetailGC-MS
Release Date2016-06-18
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8830D
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR000174
Project DOI:doi: 10.21228/M8830D
Project Title:Mice inoculation with human microbiota (AMY1)
Project Summary:Mice were inoculated with human microbiota
Institute:Cornell University
Department:Microbiology
Laboratory:Ley Lab
Last Name:Ley
First Name:Ruth
Address:Ithaca, NY
Email:rel222@cornell.edu
Phone:607-255-4954

Subject:

Subject ID:SU000225
Subject Type:Animal
Subject Species:Mus musculus
Taxonomy ID:10090
Species Group:Mammal

Factors:

Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id AMY1group
SA010297S00016349high
SA010299S00016347high
SA010301S00016339high
SA010302S00016341high
SA010303S00016353high
SA010305S00016351high
SA010306S00016343high
SA010309S00016345high
SA010311S00016355high
SA010314S00016356high
SA010296S00016354low
SA010298S00016340low
SA010300S00016342low
SA010304S00016344low
SA010307S00016346low
SA010308S00016357low
SA010310S00016348low
SA010312S00016350low
SA010313S00016352low
Showing results 1 to 19 of 19

Collection:

Collection ID:CO000213
Sample Type:Plasma

Treatment:

Treatment ID:TR000233

Sample Preparation:

Sampleprep ID:SP000227
Sampleprep Protocol Filename:SCFA_analysis_protocol-2015-03-10.docx

Combined analysis:

Analysis ID AN000308
Analysis type MS
Chromatography type GC
Chromatography system
Column Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um)
MS Type EI
MS instrument type Single quadrupole
MS instrument name Agilent 5975C
Ion Mode POSITIVE
Units nmol

Chromatography:

Chromatography ID:CH000229
Methods ID:AQM030
Methods Filename:WAXPLUS_100-200C_2_SIM.M.txt
Column Name:Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um)
Chromatography Type:GC

MS:

MS ID:MS000257
Analysis ID:AN000308
Instrument Name:Agilent 5975C
Instrument Type:Single quadrupole
MS Type:EI
Ion Mode:POSITIVE
Acquisition Parameters File:WAXPLUS_100-200C_2_SIM.M.txt
Processing Parameters File:EX00356-SCFA-Quant-methods.m.zip
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