Summary of Study ST000207

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000174. The data can be accessed directly via it's Project DOI: 10.21228/M8830D This work is supported by NIH grant, U2C- DK119886.

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Study IDST000207
Study TitleMice inoculation with human microbiota (MouseAMY1.1SCFA.Cecal)
Study TypeShort-chain fatty acid analysis
Study SummaryThe goal of the study is to evaluate the influence of salivary amylase 1 (AMY1) gene expression on the composition of blood plasma and cecal matter in mice.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Email mkachman@umich.edu
Submit Date2015-06-11
Num Groups19
Total Subjects19
Raw Data AvailableYes
Raw Data File Type(s)d
Uploaded File Size32.0 M
Analysis Type DetailGC-MS
Release Date2016-06-18
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8830D
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:


Project:

Project ID:PR000174
Project DOI:doi: 10.21228/M8830D
Project Title:Mice inoculation with human microbiota (AMY1)
Project Summary:Mice were inoculated with human microbiota
Institute:Cornell University
Department:Microbiology
Laboratory:Ley Lab
Last Name:Ley
First Name:Ruth
Address:Ithaca, NY
Email:rel222@cornell.edu
Phone:607-255-4954

Subject:

Subject ID:SU000226
Subject Type:Animal
Subject Species:Mus musculus
Taxonomy ID:10090
Species Group:Mammal

Factors:

Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id AMY1group
SA010316S00016368high
SA010318S00016366high
SA010320S00016358high
SA010321S00016360high
SA010322S00016372high
SA010324S00016370high
SA010325S00016362high
SA010328S00016364high
SA010330S00016374high
SA010333S00016375high
SA010315S00016373low
SA010317S00016359low
SA010319S00016361low
SA010323S00016363low
SA010326S00016365low
SA010327S00016376low
SA010329S00016367low
SA010331S00016369low
SA010332S00016371low
Showing results 1 to 19 of 19

Collection:

Collection ID:CO000214
Sample Type:Cecum

Treatment:

Treatment ID:TR000234

Sample Preparation:

Sampleprep ID:SP000228
Sampleprep Protocol Filename:SCFA_analysis_protocol-2015-03-10.docx

Combined analysis:

Analysis ID AN000309
Analysis type MS
Chromatography type GC
Chromatography system
Column Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um)
MS Type EI
MS instrument type Single quadrupole
MS instrument name Agilent 5975C
Ion Mode POSITIVE
Units pmol/mg sample

Chromatography:

Chromatography ID:CH000230
Methods ID:AQM030
Methods Filename:WAXPLUS_100-200C_2_SIM.M.txt
Column Name:Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um)
Chromatography Type:GC

MS:

MS ID:MS000258
Analysis ID:AN000309
Instrument Name:Agilent 5975C
Instrument Type:Single quadrupole
MS Type:EI
Ion Mode:POSITIVE
Acquisition Parameters File:WAXPLUS_100-200C_2_SIM.M.txt
Processing Parameters File:EX00357-SCFA-Quant-methods.m.zip
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