Summary of Study ST000207
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000174. The data can be accessed directly via it's Project DOI: 10.21228/M8830D This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST000207 |
| Study Title | Mice inoculation with human microbiota (MouseAMY1.1SCFA.Cecal) |
| Study Type | Short-chain fatty acid analysis |
| Study Summary | The goal of the study is to evaluate the influence of salivary amylase 1 (AMY1) gene expression on the composition of blood plasma and cecal matter in mice. |
| Institute | University of Michigan |
| Department | Biomedical Research Core Facilities |
| Laboratory | Metabolomics core |
| Last Name | Kachman |
| First Name | Maureen |
| Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
| mkachman@umich.edu | |
| Submit Date | 2015-06-11 |
| Num Groups | 19 |
| Total Subjects | 19 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | d |
| Uploaded File Size | 32.0 M |
| Analysis Type Detail | GC-MS |
| Release Date | 2016-06-18 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR000174 |
| Project DOI: | doi: 10.21228/M8830D |
| Project Title: | Mice inoculation with human microbiota (AMY1) |
| Project Summary: | Mice were inoculated with human microbiota |
| Institute: | Cornell University |
| Department: | Microbiology |
| Laboratory: | Ley Lab |
| Last Name: | Ley |
| First Name: | Ruth |
| Address: | Ithaca, NY |
| Email: | rel222@cornell.edu |
| Phone: | 607-255-4954 |
Subject:
| Subject ID: | SU000226 |
| Subject Type: | Animal |
| Subject Species: | Mus musculus |
| Taxonomy ID: | 10090 |
| Species Group: | Mammals |
Factors:
Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)
| mb_sample_id | local_sample_id | AMY1group |
|---|---|---|
| SA010316 | S00016368 | high |
| SA010318 | S00016366 | high |
| SA010320 | S00016358 | high |
| SA010321 | S00016360 | high |
| SA010322 | S00016372 | high |
| SA010324 | S00016370 | high |
| SA010325 | S00016362 | high |
| SA010328 | S00016364 | high |
| SA010330 | S00016374 | high |
| SA010333 | S00016375 | high |
| SA010315 | S00016373 | low |
| SA010317 | S00016359 | low |
| SA010319 | S00016361 | low |
| SA010323 | S00016363 | low |
| SA010326 | S00016365 | low |
| SA010327 | S00016376 | low |
| SA010329 | S00016367 | low |
| SA010331 | S00016369 | low |
| SA010332 | S00016371 | low |
| Showing results 1 to 19 of 19 |
Collection:
| Collection ID: | CO000214 |
| Collection Summary: | - |
| Sample Type: | Cecum |
Treatment:
| Treatment ID: | TR000234 |
Sample Preparation:
| Sampleprep ID: | SP000228 |
| Sampleprep Summary: | - |
| Sampleprep Protocol Filename: | SCFA_analysis_protocol-2015-03-10.docx |
Combined analysis:
| Analysis ID | AN000309 |
|---|---|
| Analysis type | MS |
| Chromatography type | GC |
| Chromatography system | |
| Column | Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um) |
| MS Type | EI |
| MS instrument type | Single quadrupole |
| MS instrument name | Agilent 5975C |
| Ion Mode | POSITIVE |
| Units | pmol/mg sample |
Chromatography:
| Chromatography ID: | CH000230 |
| Methods ID: | AQM030 |
| Methods Filename: | WAXPLUS_100-200C_2_SIM.M.txt |
| Column Name: | Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um) |
| Chromatography Type: | GC |
MS:
| MS ID: | MS000258 |
| Analysis ID: | AN000309 |
| Instrument Name: | Agilent 5975C |
| Instrument Type: | Single quadrupole |
| MS Type: | EI |
| Ion Mode: | POSITIVE |
| Acquisition Parameters File: | WAXPLUS_100-200C_2_SIM.M.txt |
| Processing Parameters File: | EX00357-SCFA-Quant-methods.m.zip |
