Summary of Study ST000212
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000178. The data can be accessed directly via it's Project DOI: 10.21228/M8VS3Q This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST000212 |
Study Title | Murine gut bile acid analysis |
Study Type | Changes to bile acids in the murine gut after antibiotics Bile acid analysis (colon contents/plasma) |
Study Summary | Samples were collected at the time of necropsy. Contents from the lumen of the gastrointestinal tract of C57BL/6 mice were collected, flash frozen and stored in the -80C until processing for metabolomics assay. C57BL/6 mice treated with cefoperazone for 5 days with two days of water (n=5) were harvested along with non-antibiotic treated mice (n=5). Contents from the small intesine (duodenum, jejunum and ileum), the large intestine (cecum, colon) and stool were collected for targeted bile acid analysis. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333439/ |
Institute | University of Michigan |
Department | Biomedical Research Core Facilities |
Laboratory | Metabolomics core |
Last Name | Kachman |
First Name | Maureen |
Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
mkachman@umich.edu | |
Submit Date | 2015-06-12 |
Num Groups | 12 |
Total Subjects | 60 |
Raw Data Available | Yes |
Raw Data File Type(s) | d |
Uploaded File Size | 32 M |
Analysis Type Detail | LC-MS |
Release Date | 2015-12-28 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000178 |
Project DOI: | doi: 10.21228/M8VS3Q |
Project Title: | Bile Acid Studies in Murine Gut |
Project Summary: | Targeted bile acid analysis throughout the murine GI tract before and after antibiotics |
Institute: | University of Michigan |
Department: | Int Med-Infectious Diseases |
Laboratory: | Theriot Lab |
Last Name: | Theriot |
First Name: | Casey |
Address: | Ann Arbor, MI |
Email: | caseythe@umich.edu |
Phone: | 734-763-4133 |
Subject:
Subject ID: | SU000231 |
Subject Type: | Animal |
Subject Species: | Mus musculus |
Taxonomy ID: | 10090 |
Species Group: | Mammals |
Factors:
Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)
mb_sample_id | local_sample_id | GI tract location | treatment |
---|---|---|---|
SA010429 | S00012887 | cecum | cefoperazone |
SA010430 | S00012884 | cecum | cefoperazone |
SA010431 | S00012885 | cecum | cefoperazone |
SA010432 | S00012886 | cecum | cefoperazone |
SA010433 | S00012883 | cecum | cefoperazone |
SA010434 | S00012914 | cecum | vehicle |
SA010435 | S00012917 | cecum | vehicle |
SA010436 | S00012916 | cecum | vehicle |
SA010437 | S00012915 | cecum | vehicle |
SA010438 | S00012913 | cecum | vehicle |
SA010439 | S00012891 | colon | cefoperazone |
SA010440 | S00012890 | colon | cefoperazone |
SA010441 | S00012889 | colon | cefoperazone |
SA010442 | S00012888 | colon | cefoperazone |
SA010443 | S00012892 | colon | cefoperazone |
SA010444 | S00012922 | colon | vehicle |
SA010445 | S00012919 | colon | vehicle |
SA010446 | S00012920 | colon | vehicle |
SA010447 | S00012921 | colon | vehicle |
SA010448 | S00012918 | colon | vehicle |
SA010449 | S00012868 | duodenum | cefoperazone |
SA010450 | S00012872 | duodenum | cefoperazone |
SA010451 | S00012869 | duodenum | cefoperazone |
SA010452 | S00012870 | duodenum | cefoperazone |
SA010453 | S00012871 | duodenum | cefoperazone |
SA010454 | S00012901 | duodenum | vehicle |
SA010455 | S00012902 | duodenum | vehicle |
SA010456 | S00012899 | duodenum | vehicle |
SA010457 | S00012898 | duodenum | vehicle |
SA010458 | S00012900 | duodenum | vehicle |
SA010459 | S00012880 | ileum | cefoperazone |
SA010460 | S00012878 | ileum | cefoperazone |
SA010461 | S00012881 | ileum | cefoperazone |
SA010462 | S00012879 | ileum | cefoperazone |
SA010463 | S00012882 | ileum | cefoperazone |
SA010464 | S00012909 | ileum | vehicle |
SA010465 | S00012910 | ileum | vehicle |
SA010466 | S00012911 | ileum | vehicle |
SA010467 | S00012908 | ileum | vehicle |
SA010468 | S00012912 | ileum | vehicle |
SA010469 | S00012874 | jejunum | cefoperazone |
SA010470 | S00012876 | jejunum | cefoperazone |
SA010471 | S00012873 | jejunum | cefoperazone |
SA010472 | S00012875 | jejunum | cefoperazone |
SA010473 | S00012877 | jejunum | cefoperazone |
SA010474 | S00012907 | jejunum | vehicle |
SA010475 | S00012903 | jejunum | vehicle |
SA010476 | S00012904 | jejunum | vehicle |
SA010477 | S00012905 | jejunum | vehicle |
SA010478 | S00012906 | jejunum | vehicle |
SA010479 | S00012897 | stool | cefoperazone |
SA010480 | S00012896 | stool | cefoperazone |
SA010481 | S00012893 | stool | cefoperazone |
SA010482 | S00012894 | stool | cefoperazone |
SA010483 | S00012895 | stool | cefoperazone |
SA010484 | S00012927 | stool | vehicle |
SA010485 | S00012926 | stool | vehicle |
SA010486 | S00012923 | stool | vehicle |
SA010487 | S00012924 | stool | vehicle |
SA010488 | S00012925 | stool | vehicle |
Showing results 1 to 60 of 60 |
Collection:
Collection ID: | CO000219 |
Collection Summary: | - |
Sample Type: | Cecum |
Treatment:
Treatment ID: | TR000239 |
Sample Preparation:
Sampleprep ID: | SP000233 |
Sampleprep Summary: | - |
Sampleprep Protocol Filename: | Bile-acids-2015-03-11.docx |
Combined analysis:
Analysis ID | AN000314 |
---|---|
Analysis type | MS |
Chromatography type | |
Chromatography system | |
Column | |
MS Type | ESI |
MS instrument type | Triple quadrupole |
MS instrument name | Agilent 6490 QQQ |
Ion Mode | NEGATIVE |
Units | µg/100mg sample |
Chromatography:
Chromatography ID: | CH000235 |
Methods ID: | AQM040 |
Methods Filename: | 2014-03-27-Bile_acid-full-ESN-insert.m.zip |
MS:
MS ID: | MS000263 |
Analysis ID: | AN000314 |
Instrument Name: | Agilent 6490 QQQ |
Instrument Type: | Triple quadrupole |
MS Type: | ESI |
Ion Mode: | NEGATIVE |
Acquisition Parameters File: | 2014-03-27-Bile_acid-full-ESN-insert.m.zip |
Processing Parameters File: | EX00256-Bile-Acids-Quant-method.m.zip |