Summary of Study ST000273

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000217. The data can be accessed directly via it's Project DOI: 10.21228/M8BP4D This work is supported by NIH grant, U2C- DK119886.

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Study IDST000273
Study TitleShort-chain fatty acid analysis in bronchoalveolar lavage fluid (BAL SCFA)
Study TypeWe will correlate the bacterial gene abundance with the metabolite concentration
Study SummaryThe study is intended to find if correlation exists between the abundance of bacterial gene for pyruvate ferredoxin oxidoreductase (PFOR) and short-chain fatty acids concentration in bronchoalveolar lavage fluid from patients with HIV-Associated Bacterial Pneumonia.
Institute
University of Michigan; New York University
DepartmentPulmonary Medicine
LaboratoryWeiden Lab(New York University School of Medicine)
Last NameWeiden
First NameMichael
AddressNew York
Emailmichael.weiden@nyumc.org
Phone212-263-6479
Submit Date2014-03-26
Num Groups2
Total Subjects39
Study CommentsPFOR stands for pyruvate ferredoxin oxidoreductase gene
Raw Data File Type(s)d
Analysis Type DetailGC-MS
Release Date2016-01-06
Release Version1
Michael Weiden Michael Weiden
https://dx.doi.org/10.21228/M8BP4D
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:


Project:

Project ID:PR000217
Project DOI:doi: 10.21228/M8BP4D
Project Title:Longitudinal Studies of HIV-Associated Bacterial Pneumonia
Project Summary:SCFA metabolites, increased Treg, reduced Th17 lymphocytes and blunted immune response ex vivo
Institute:New York University
Department:Pulmonary Medicine
Laboratory:Weiden Lab
Last Name:Weiden
First Name:Michael
Address:New York
Email:michael.weiden@nyumc.org
Phone:212-263-6479

Subject:

Subject ID:SU000293
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id PFOR level
SA012166S00013202High
SA012167S00013203High
SA012168S00013204High
SA012169S00013201High
SA012170S00013200High
SA012171S00013197High
SA012172S00013198High
SA012173S00013199High
SA012174S00013205High
SA012175S00013206High
SA012176S00013212High
SA012177S00013213High
SA012178S00013214High
SA012179S00013211High
SA012180S00013210High
SA012181S00013207High
SA012182S00013208High
SA012183S00013209High
SA012184S00013196High
SA012185S00013195High
SA012186S00013190High
SA012187S00013188High
SA012188S00013191High
SA012189S00013189High
SA012190S00013194High
SA012191S00013193High
SA012192S00013192High
SA012193S00013180Low
SA012194S00013181Low
SA012195S00013179Low
SA012196S00013177Low
SA012197S00013182Low
SA012198S00013178Low
SA012199S00013186Low
SA012200S00013187Low
SA012201S00013176Low
SA012202S00013185Low
SA012203S00013184Low
SA012204S00013183Low
Showing results 1 to 39 of 39

Collection:

Collection ID:CO000287
Sample Type:Bronchoalveolar Lavage Fluid

Treatment:

Treatment ID:TR000307

Sample Preparation:

Sampleprep ID:SP000301
Sampleprep Protocol Filename:SCFA_analysis_protocol-2015-03-10.docx

Combined analysis:

Analysis ID AN000436
Analysis type MS
Chromatography type GC
Chromatography system
Column Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um)
MS Type EI
MS instrument type Single quadrupole
MS instrument name Agilent 5975C
Ion Mode POSITIVE
Units

Chromatography:

Chromatography ID:CH000305
Methods ID:AQM030
Methods Filename:WAXPLUS_100-200C_2_SIM.M.txt
Column Name:Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um)
Chromatography Type:GC

MS:

MS ID:MS000377
Analysis ID:AN000436
Instrument Name:Agilent 5975C
Instrument Type:Single quadrupole
MS Type:EI
Ion Mode:POSITIVE
Acquisition Parameters File:WAXPLUS_100-200C_2_SIM.M.txt
Processing Parameters File:EX00259-SCFA-Quant-methods.m.zip
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