Summary of Study ST000273
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000217. The data can be accessed directly via it's Project DOI: 10.21228/M8BP4D This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST000273 |
Study Title | Short-chain fatty acid analysis in bronchoalveolar lavage fluid (BAL SCFA) |
Study Type | We will correlate the bacterial gene abundance with the metabolite concentration |
Study Summary | The study is intended to find if correlation exists between the abundance of bacterial gene for pyruvate ferredoxin oxidoreductase (PFOR) and short-chain fatty acids concentration in bronchoalveolar lavage fluid from patients with HIV-Associated Bacterial Pneumonia. |
Institute | University of Michigan; New York University |
Department | Pulmonary Medicine |
Laboratory | Weiden Lab(New York University School of Medicine) |
Last Name | Weiden |
First Name | Michael |
Address | New York |
michael.weiden@nyumc.org | |
Phone | 212-263-6479 |
Submit Date | 2014-03-26 |
Num Groups | 2 |
Total Subjects | 39 |
Study Comments | PFOR stands for pyruvate ferredoxin oxidoreductase gene |
Raw Data File Type(s) | d |
Analysis Type Detail | GC-MS |
Release Date | 2016-01-06 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000217 |
Project DOI: | doi: 10.21228/M8BP4D |
Project Title: | Longitudinal Studies of HIV-Associated Bacterial Pneumonia |
Project Summary: | SCFA metabolites, increased Treg, reduced Th17 lymphocytes and blunted immune response ex vivo |
Institute: | New York University |
Department: | Pulmonary Medicine |
Laboratory: | Weiden Lab |
Last Name: | Weiden |
First Name: | Michael |
Address: | New York |
Email: | michael.weiden@nyumc.org |
Phone: | 212-263-6479 |
Subject:
Subject ID: | SU000293 |
Subject Type: | Human |
Subject Species: | Homo sapiens |
Taxonomy ID: | 9606 |
Species Group: | Mammals |
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
mb_sample_id | local_sample_id | PFOR level |
---|---|---|
SA012166 | S00013202 | High |
SA012167 | S00013203 | High |
SA012168 | S00013204 | High |
SA012169 | S00013201 | High |
SA012170 | S00013200 | High |
SA012171 | S00013197 | High |
SA012172 | S00013198 | High |
SA012173 | S00013199 | High |
SA012174 | S00013205 | High |
SA012175 | S00013206 | High |
SA012176 | S00013212 | High |
SA012177 | S00013213 | High |
SA012178 | S00013214 | High |
SA012179 | S00013211 | High |
SA012180 | S00013210 | High |
SA012181 | S00013207 | High |
SA012182 | S00013208 | High |
SA012183 | S00013209 | High |
SA012184 | S00013196 | High |
SA012185 | S00013195 | High |
SA012186 | S00013190 | High |
SA012187 | S00013188 | High |
SA012188 | S00013191 | High |
SA012189 | S00013189 | High |
SA012190 | S00013194 | High |
SA012191 | S00013193 | High |
SA012192 | S00013192 | High |
SA012193 | S00013180 | Low |
SA012194 | S00013181 | Low |
SA012195 | S00013179 | Low |
SA012196 | S00013177 | Low |
SA012197 | S00013182 | Low |
SA012198 | S00013178 | Low |
SA012199 | S00013186 | Low |
SA012200 | S00013187 | Low |
SA012201 | S00013176 | Low |
SA012202 | S00013185 | Low |
SA012203 | S00013184 | Low |
SA012204 | S00013183 | Low |
Showing results 1 to 39 of 39 |
Collection:
Collection ID: | CO000287 |
Collection Summary: | -- |
Sample Type: | Bronchoalveolar Lavage Fluid |
Treatment:
Treatment ID: | TR000307 |
Sample Preparation:
Sampleprep ID: | SP000301 |
Sampleprep Summary: | -- |
Sampleprep Protocol Filename: | SCFA_analysis_protocol-2015-03-10.docx |
Combined analysis:
Analysis ID | AN000436 |
---|---|
Analysis type | MS |
Chromatography type | GC |
Chromatography system | -- |
Column | Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um) |
MS Type | EI |
MS instrument type | Single quadrupole |
MS instrument name | Agilent 5975C |
Ion Mode | POSITIVE |
Units |
Chromatography:
Chromatography ID: | CH000305 |
Chromatography Summary: | -- |
Methods ID: | AQM030 |
Methods Filename: | WAXPLUS_100-200C_2_SIM.M.txt |
Instrument Name: | -- |
Column Name: | Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um) |
Column Temperature: | -- |
Flow Gradient: | -- |
Flow Rate: | -- |
Solvent A: | -- |
Solvent B: | -- |
Chromatography Type: | GC |
MS:
MS ID: | MS000377 |
Analysis ID: | AN000436 |
Instrument Name: | Agilent 5975C |
Instrument Type: | Single quadrupole |
MS Type: | EI |
Ion Mode: | POSITIVE |
Acquisition Parameters File: | WAXPLUS_100-200C_2_SIM.M.txt |
Processing Parameters File: | EX00259-SCFA-Quant-methods.m.zip |