Summary of Study ST000277

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000221. The data can be accessed directly via it's Project DOI: 10.21228/M8ZC71 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  
Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data files
Study IDST000277
Study TitlePouch metabolome
Study TypeBile acid analysis (colon contents/plasma)
Study SummaryThe goal of the study was to compare the influence of Ileal pouch-anal anastomosis (IPAA) surgical treatment on patients with ulcerative colitis (UC) vs those with familial adenomatous polyposis (FAP). Stool samples were obtained at the time of clinic visit, immediately frozen and stored at -80oC until the assay. There were no exclusion criteria.
Institute
University of Michigan
DepartmentGastroenterology and Hepatology
LaboratoryHabtezion Lab(Stanford University)
Last NameSim
First NameDavis
AddressStanford, CA
Emaildsim1@stanford.edu
Phone650-725-6511
Submit Date2014-09-10
Num Groups6
Total Subjects15
Raw Data File Type(s)d
Analysis Type DetailLC-MS
Release Date2020-03-03
Release Version1
Davis Sim Davis Sim
https://dx.doi.org/10.21228/M8ZC71
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000221
Project DOI:doi: 10.21228/M8ZC71
Project Title:Pouchitis Studies
Project Type:Bile acid analysis (colon contents/plasma)
Project Summary:Using metabolomics to investigate pouchitis
Institute:Stanford University
Department:Gastroenterology and Hepatology
Laboratory:Habtezion Lab
Last Name:Habtezion
First Name:Aida
Address:Stanford, CA
Email:aida.habtezion@stanford.edu
Phone:650-736-5555

Subject:

Subject ID:SU000297
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Mammals

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Condition Taking antibiotics Taking probiotics
SA012229S00015882FAP + IPAA NO NO
SA012230S00015884FAP + IPAA NO NO
SA012231S00015885FAP + IPAA NO NO
SA012232S00015883FAP + IPAA NO NO
SA012233S00015891UC + IPAA NO NO
SA012234S00015892UC + IPAA NO NO
SA012235S00015893UC + IPAA NO NO
SA012236S00015890UC + IPAA NO NO
SA012237S00015888UC + IPAA NO NO
SA012238S00015887UC + IPAA NO NO
SA012239S00015886UC + IPAA NO YES
SA012240S00015889UC + IPAA YES NO
SA012241S00015895UC + IPAA YES NO
SA012242S00015894UC + IPAA YES YES
Showing results 1 to 14 of 14

Collection:

Collection ID:CO000291
Collection Summary:-
Sample Type:Feces

Treatment:

Treatment ID:TR000311

Sample Preparation:

Sampleprep ID:SP000305
Sampleprep Summary:-
Sampleprep Protocol Filename:Bile-acids-2015-03-11.docx

Combined analysis:

Analysis ID AN000442
Analysis type MS
Chromatography type Reversed phase
Chromatography system
Column Waters Acquity BEH C18 (50 x 2.1mm,1.7um)
MS Type ESI
MS instrument type Triple quadrupole
MS instrument name Agilent 6490 QQQ
Ion Mode NEGATIVE
Units nmol/mg dry sample weight

Chromatography:

Chromatography ID:CH000313
Methods ID:AQM041
Methods Filename:2014-07-30-Bile_acid-full-BEH-C18-h.m.zip
Column Name:Waters Acquity BEH C18 (50 x 2.1mm,1.7um)
Chromatography Type:Reversed phase

MS:

MS ID:MS000383
Analysis ID:AN000442
Instrument Name:Agilent 6490 QQQ
Instrument Type:Triple quadrupole
MS Type:ESI
Ion Mode:NEGATIVE
Acquisition Parameters File:2014-07-30-Bile_acid-full-BEH-C18-h.m.zip
  logo