Summary of Study ST000293
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000234. The data can be accessed directly via it's Project DOI: 10.21228/M8DG6Q This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST000293 |
Study Title | Vitamin B6 Effects on one-carbon metabolism |
Study Type | Before-and-after |
Study Summary | Vitamin B6 supplementation with 10 mg/d pyridoxine-HCl for 28-d was given to oral contraceptive (OC) users who initially had vitamin B6 deficiency (PLP < 30 nmol/L). Samples are analyzed before and after supplementation. In addition samples from OC users with low (PLP < 30 nmol/L) , middle (PLP 31-99 nmol/L) and high (PLP > 100 nmol/L) vitamin B6 concentration are compared. |
Institute | University of Florida |
Department | SECIM |
Laboratory | Food Science and Human Nutrition |
Last Name | Gregory |
First Name | Jesse |
Address | -- |
jfgy@ufl.edu | |
Phone | 352-392-1991 ext 225 |
Submit Date | 2015-03-13 |
Num Groups | 3 |
Total Subjects | 72 |
Raw Data Available | Yes |
Raw Data File Type(s) | raw(Thermo) |
Analysis Type Detail | LC-MS |
Release Date | 2016-12-22 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000234 |
Project DOI: | doi: 10.21228/M8DG6Q |
Project Title: | Metabolite profiling before and after vitamin B6 supplementation |
Project Summary: | Vitamin B6 Effects on one-carbon metabolism |
Institute: | University of Florida |
Department: | Food Science and Human Nutrition |
Laboratory: | Dr. Jesse Gregory |
Last Name: | Gregory |
First Name: | Jesse |
Address: | -- |
Email: | jfgy@ufl.edu |
Phone: | 352-392-1991 ext 225 |
Subject:
Subject ID: | SU000313 |
Subject Type: | Human |
Subject Species: | Homo sapiens |
Taxonomy ID: | 9606 |
Subject Comments: | Gregory_SECIM_Subjects_20150313.txt |
Species Group: | Mammals |
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
mb_sample_id | local_sample_id | B6 Status | B6 Supplementation |
---|---|---|---|
SA013313 | 209164 | High | After |
SA013314 | 213304 | High | After |
SA013315 | 214880 | High | After |
SA013316 | 201676 | High | After |
SA013317 | 200332 | High | After |
SA013318 | 195259 | High | After |
SA013319 | 199594 | High | After |
SA013320 | 199917 | High | After |
SA013321 | 202201 | High | After |
SA013322 | 210061 | High | After |
SA013323 | 186289 | High | None |
SA013324 | 186385 | High | None |
SA013325 | 184585 | High | None |
SA013326 | 183601 | High | None |
SA013327 | 183112 | High | None |
SA013328 | 209037 | High | None |
SA013329 | 208069 | High | None |
SA013330 | 186428 | High | None |
SA013331 | 200484 | High | None |
SA013332 | 201343 | High | None |
SA013333 | 203467 | High | None |
SA013334 | 207652 | High | None |
SA013335 | 191485 | High | None |
SA013336 | 181435 | High | None |
SA013337 | 183111 | High | None |
SA013338 | 182346 | High | None |
SA013339 | 181896 | High | None |
SA013340 | 200912 | Low | Before |
SA013341 | 201440 | Low | Before |
SA013342 | 199899 | Low | Before |
SA013343 | 208767 | Low | Before |
SA013344 | 193557 | Low | Before |
SA013345 | 212837 | Low | Before |
SA013346 | 193152 | Low | Before |
SA013347 | 198715 | Low | Before |
SA013348 | 214460 | Low | Before |
SA013349 | 209363 | Low | Before |
SA013350 | 185631 | Low | None |
SA013351 | 203581 | Low | None |
SA013352 | 208554 | Low | None |
SA013353 | 209828 | Low | None |
SA013354 | 202463 | Low | None |
SA013355 | 200433 | Low | None |
SA013356 | 184721 | Low | None |
SA013357 | 186373 | Low | None |
SA013358 | 197265 | Low | None |
SA013359 | 184606 | Low | None |
SA013360 | 200967 | Medium | None |
SA013361 | 196557 | Medium | None |
SA013362 | 196356 | Medium | None |
SA013363 | 210166 | Medium | None |
SA013364 | 203115 | Medium | None |
SA013365 | 197075 | Medium | None |
SA013366 | 195024 | Medium | None |
SA013367 | 193029 | Medium | None |
SA013368 | 181749 | Medium | None |
SA013369 | 210190 | Medium | None |
SA013370 | 184673 | Medium | None |
SA013371 | 190182 | Medium | None |
SA013372 | 197255 | Medium | None |
SA013373 | 197747 | Medium | None |
SA013374 | 203245 | Medium | None |
SA013375 | 203440 | Medium | None |
SA013376 | 203777 | Medium | None |
SA013377 | 203868 | Medium | None |
SA013378 | 200215 | Medium | None |
SA013379 | 202317 | Medium | None |
SA013380 | 198028 | Medium | None |
SA013381 | 198557 | Medium | None |
SA013382 | 200037 | Medium | None |
SA013383 | 202761 | Medium | None |
SA013384 | 207787 | Medium | None |
Showing results 1 to 72 of 72 |
Collection:
Collection ID: | CO000307 |
Collection Summary: | n/a |
Collection Protocol Filename: | Gregory_SECIM_Collections_20150313.txt |
Treatment:
Treatment ID: | TR000327 |
Treatment Summary: | n/a |
Treatment Protocol Filename: | Gregory_SECIM_Treatment_20150313.txt |
Sample Preparation:
Sampleprep ID: | SP000321 |
Sampleprep Summary: | - |
Sampleprep Protocol Filename: | SB_AA_Assay.pdf, SB_OA_Assay.pdf |
Combined analysis:
Analysis ID | AN000468 | AN000469 |
---|---|---|
Analysis type | MS | MS |
Chromatography type | Reversed phase | Reversed phase |
Chromatography system | Agilent 1290 Infinity | Thermo Dionex Ultimate 3000 |
Column | Waters AccQ Tag (100 x 2mm,1.7um) | Waters Acquity BEH C18 (100 x 2mm,1.7um) |
MS Type | ESI | ESI |
MS instrument type | Triple quadrupole | Triple quadrupole |
MS instrument name | Agilent 6490 QQQ | Thermo Quantiva QQQ |
Ion Mode | POSITIVE | POSITIVE |
Units | uM | uM |
Chromatography:
Chromatography ID: | CH000332 |
Chromatography Summary: | Waters AccQ·Tag Amino Acid Assay |
Methods Filename: | SB_AA_Assay.pdf |
Instrument Name: | Agilent 1290 Infinity |
Column Name: | Waters AccQ Tag (100 x 2mm,1.7um) |
Column Temperature: | 55 |
Flow Rate: | 0.7 mL/min |
Solvent A: | AccQ·Tag Eluent A |
Solvent B: | accQ·Tag Eluent B |
Chromatography Type: | Reversed phase |
Chromatography ID: | CH000333 |
Methods Filename: | SB_OA_Assay.pdf |
Instrument Name: | Thermo Dionex Ultimate 3000 |
Column Name: | Waters Acquity BEH C18 (100 x 2mm,1.7um) |
Column Temperature: | 45 |
Flow Rate: | 0.3 mL/min |
Solvent A: | 100% water; 0.1% formic acid |
Solvent B: | 100% acetonitrile; 0.1% formic acid |
Chromatography Type: | Reversed phase |
MS:
MS ID: | MS000408 |
Analysis ID: | AN000468 |
Instrument Name: | Agilent 6490 QQQ |
Instrument Type: | Triple quadrupole |
MS Type: | ESI |
Ion Mode: | POSITIVE |
Analysis Protocol File: | SB_AA_Assay.pdf |
MS ID: | MS000409 |
Analysis ID: | AN000469 |
Instrument Name: | Thermo Quantiva QQQ |
Instrument Type: | Triple quadrupole |
MS Type: | ESI |
Ion Mode: | POSITIVE |
Analysis Protocol File: | SB_OA_Assay.pdf |