Summary of Study ST000323

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000261. The data can be accessed directly via it's Project DOI: 10.21228/M8230J This work is supported by NIH grant, U2C- DK119886.

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Study IDST000323
Study TitleProgesterone level effects on primary metabolites in uterus, blood, and ovaries (Part 2:Uterine flush)
Study SummaryIn this experiment a hormonal protocol was applied to control follicle growth to yield larger or smaller preovulatory follicle and CLs and consequently different circulating Progesterone (P4) concentrations during early diestrus. The two different animal's group are: high or low progesterone levels. The effects of these progesterone levels was tested in the uterus of the cow.
Institute
University of California, Davis
DepartmentGenome and Biomedical Sciences Facility
LaboratoryWCMC Metabolomics Core
Last NameFiehn
First NameOliver
Address1315 Genome and Biomedical Sciences Facility, 451 Health Sciences Drive, Davis, CA 95616
Emailofiehn@ucdavis.edu
Phone(530) 754-8258
Submit Date2015-03-16
Num Groups1
Total Subjects60
Raw Data AvailableYes
Raw Data File Type(s)d
Analysis Type DetailLC-MS
Release Date2016-01-27
Release Version1
Oliver Fiehn Oliver Fiehn
https://dx.doi.org/10.21228/M8230J
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR000261
Project DOI:doi: 10.21228/M8230J
Project Title:Progesterone level effects on primary metabolites in uterus, blood, and ovaries
Project Summary:In this experiment a hormonal protocol was applied to control follicle growth to yield larger or smaller preovulatory follicle and CLs and consequently different circulating Progesterone (P4) concentrations during early diestrus. The two different animal's group are: high or low progesterone levels. The effects of these progesterone levels was tested in the uterus, blood, and ovaries of the cow.
Institute:University of California, Davis
Department:Genome and Biomedical Sciences Facility
Laboratory:WCMC Metabolomics Core
Last Name:Fiehn
First Name:Oliver
Address:1315 Genome and Biomedical Sciences Facility, 451 Health Sciences Drive, Davis, CA 95616
Email:ofiehn@ucdavis.edu
Phone:(530) 754-8258
Funding Source:U24DK097154

Subject:

Subject ID:SU000343
Subject Type:Animal
Subject Species:Bos taurus
Taxonomy ID:9913
Species Group:Mammals

Factors:

Subject type: Animal; Subject species: Bos taurus (Factor headings shown in green)

mb_sample_id local_sample_id Organ
SA014622172Flush
SA014623173Flush
SA014624171Flush
SA014625139Flush
SA014626138Flush
SA014627174Flush
SA014628140Flush
SA014629175Flush
SA014630179Flush
SA014631180Flush
SA014632178Flush
SA014633177Flush
SA014634176Flush
SA014635137Flush
SA014636136Flush
SA01463786Flush
SA01463887Flush
SA01463985Flush
SA01464084Flush
SA01464182Flush
SA01464283Flush
SA01464388Flush
SA01464489Flush
SA014645134Flush
SA014646135Flush
SA014647133Flush
SA014648132Flush
SA01464990Flush
SA014650131Flush
SA01465181Flush
Showing results 1 to 30 of 30

Collection:

Collection ID:CO000337
Collection Summary:Uterine flushing: uterus were flushed postmortem with isotonic saline solution and kept at 80ºC. There was no inactivation or attenuation because samples are not biohazard.
Collection Protocol Filename:StudyDesign-MarioBinelli-101414.pdf
Sample Type:uterine flushing

Treatment:

Treatment ID:TR000357
Treatment Summary:There was no specific treatment. A hormonal protocol was applied to control follicle growth to yield larger or smaller preovulatory follicle and CLs and consequently different circulating Progesterone (P4) concentrations during early diestrus. The two different animal's group are: high or low progesterone levels.
Treatment Protocol Filename:StudyDesign-MarioBinelli-101414.pdf

Sample Preparation:

Sampleprep ID:SP000351
Sampleprep Summary:-
Sampleprep Protocol Filename:SOP_Extraction_of_Mammalian_Tissue_Samples.pdf

Chromatography:

Chromatography ID:CH000361
Chromatography Summary:UPLC
Methods Filename:Data_Dictionary_Fiehn_laboratory_CSH_QTOF_lipidomics_05-29-2014.pdf
Instrument Name:Unspecified
Column Name:Waters Acquity CSH C18 (100 x 2.1mm,1.7um)
Column Pressure:450-850 bar
Column Temperature:65 C
Flow Gradient:15% B to 99% B
Flow Rate:0.6 mL/min
Internal Standard:See data dictionary
Retention Time:See data dictionary
Sample Injection:1.67 uL
Solvent A:60% acetonitrile/40% water; 10mM formic acid; 10mM ammonium formate
Solvent B:90% isopropanol/10% acetonitrile; 10mM formic acid; 10mM ammonium formate
Analytical Time:13 min
Capillary Voltage:3500
Time Program:15 min
Weak Wash Solvent Name:Isopropanol
Weak Wash Volume:5 seconds
Strong Wash Solvent Name:Isopropanol
Target Sample Temperature:Autosampler temp 4 C
Randomization Order:Excel
Chromatography Type:Reversed phase

Analysis:

Analysis ID:AN000514
Laboratory Name:WCMC Metabolomics Core
Analysis Type:MS
Instrument Name:Agilent 6530 QTOF
Software Version:MassHunter
Detector Type:TOF MCP
Data Format:.d
Chromatography ID:CH000361
Num Factors:1
Num Metabolites:102
Rt Units:Minutes
Units:Peak height
  
Analysis ID:AN000515
Laboratory Name:WCMC Metabolomics Core
Analysis Type:MS
Instrument Name:Agilent 6550 QTOF
Software Version:MassHunter
Detector Type:TOF MCP
Data Format:.d
Chromatography ID:CH000361
Num Factors:1
Num Metabolites:32
Rt Units:Minutes
Units:Peak height
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