Summary of Study ST000371

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000294. The data can be accessed directly via it's Project DOI: 10.21228/M81W2X This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  
Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data files (Contains raw data)
Study IDST000371
Study TitleColon cancer metabolomics via stool sample
Study TypeRegular
Study SummaryThere are 4 germfree controls and 4 germfree with bacteria. After treatment, the mouse stool samples were collected at different timepoints: day 0, day 10, day 26, day 47, and day 61 or 70. Place the stool samples into liquid nitrogen after they were collected, then stored in -80oC.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2015-04-23
Num Groups11
Total Subjects41
Raw Data AvailableYes
Raw Data File Type(s)d
Analysis Type DetailGC-MS
Release Date2016-12-22
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M81W2X
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000294
Project DOI:doi: 10.21228/M81W2X
Project Title:Bacterial Regulators of Tumorigenesis
Project Summary:identify bacterial products associated with reduced tumorigenesis
Institute:University of Michigan
Department:Surgery
Laboratory:Lubman, David Lab
Last Name:Lubman
First Name:David
Address:Ann Arbor, MI
Email:dmlubman@umich.edu
Phone:734-647-8834

Subject:

Subject ID:SU000392
Subject Type:Animal
Subject Species:Mus musculus
Taxonomy ID:10090
Species Group:Mammals

Factors:

Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id Time (day) Treatment
SA016918S0001814610 GF bacteria
SA016919S0001815610 GF bacteria
SA016920S0001815110 GF bacteria
SA016921S0001814110 GF bacteria
SA016922S0001816110 GF no bacteria
SA016923S0001817110 GF no bacteria
SA016924S0001816610 GF no bacteria
SA016925S0001817610 GF no bacteria
SA016926S0001815726 GF bacteria
SA016927S0001815226 GF bacteria
SA016928S0001814726 GF bacteria
SA016929S0001814226 GF bacteria
SA016930S0001816726 GF no bacteria
SA016931S0001817726 GF no bacteria
SA016932S0001817226 GF no bacteria
SA016933S0001816226 GF no bacteria
SA016934S0001815847 GF bacteria
SA016935S0001814847 GF bacteria
SA016936S0001815347 GF bacteria
SA016937S0001814347 GF bacteria
SA016938S0001817347 GF no bacteria
SA016939S0001816347 GF no bacteria
SA016940S0001816847 GF no bacteria
SA016941S0001817847 GF no bacteria
SA016942S0001815961 GF bacteria
SA016943S0001814961 GF bacteria
SA016944S0001814461 GF bacteria
SA016945S0001815461 GF bacteria
SA016946S0001817970 GF no bacteria
SA016947S0001816470 GF no bacteria
SA016948S0001816970 GF no bacteria
SA016949S0001817470 GF no bacteria
SA016910S00018140- GF bacteria
SA016911S00018150- GF bacteria
SA016912S00018155- GF bacteria
SA016913S00018145- GF bacteria
SA016914S00018170- none
SA016915S00018175- none
SA016916S00018165- none
SA016917S00018160- none
Showing results 1 to 40 of 40

Collection:

Collection ID:CO000386
Collection Summary:None
Sample Type:Pooled sample

Treatment:

Treatment ID:TR000406
Treatment Summary:none

Sample Preparation:

Sampleprep ID:SP000399
Sampleprep Summary:none
Sampleprep Protocol Filename:ShortChainFattyAcids-20150305.docx

Combined analysis:

Analysis ID AN000605
Analysis type MS
Chromatography type GC
Chromatography system Agilent 7890A
Column Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um)
MS Type EI
MS instrument type Single quadrupole
MS instrument name Agilent 5975C
Ion Mode POSITIVE
Units nmol/mg sample

Chromatography:

Chromatography ID:CH000431
Methods Filename:WAXPLUS_100-200C_2_SIM.M.zip
Instrument Name:Agilent 7890A
Column Name:Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um)
Chromatography Type:GC

MS:

MS ID:MS000538
Analysis ID:AN000605
Instrument Name:Agilent 5975C
Instrument Type:Single quadrupole
MS Type:EI
Ion Mode:POSITIVE
  logo