Summary of Study ST000474
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000362. The data can be accessed directly via it's Project DOI: 10.21228/M8831S This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST000474 |
Study Title | Metabolomic testing of a putative MDH inhibitor (targeted) |
Study Type | drug treatment (single dose and timepoint) |
Study Summary | HL-60 cells will be treated for 15hr with a putative MDH inhibitor or vehicle (n=5 per group) |
Institute | University of Florida |
Department | SECIM |
Laboratory | Case Western University |
Last Name | Wald |
First Name | David |
Address | 2103 Cornell Rd WRB3-530 Cleveland, OH 44106 |
dnw@case.edu | |
Phone | 2163685668 |
Submit Date | 2016-08-31 |
Num Groups | 2 |
Total Subjects | 20 |
Study Comments | Total subjects: 10 for global testing and 10 for targeted testing |
Raw Data File Type(s) | raw(Thermo) |
Analysis Type Detail | LC-MS |
Release Date | 2017-10-03 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000362 |
Project DOI: | doi: 10.21228/M8831S |
Project Title: | Metabolomic testing of a putative MDH inhibitor |
Project Summary: | Testing for metabolomic changes after treatment of leukemia cells with a putative MDH inhibitor |
Institute: | Case Western Reserve University |
Department: | Pathology |
Laboratory: | Foundation and Institutional funds |
Last Name: | Wald |
First Name: | David |
Address: | 2103 Cornell Rd WRB3-530 Cleveland, OH 44106 |
Email: | dnw@case.edu |
Phone: | NA |
Subject:
Subject ID: | SU000495 |
Subject Type: | Human leukemia cells |
Subject Species: | Homo sapiens |
Taxonomy ID: | 9606 |
Cell Strain Details: | HL-60 |
Subject Comments: | immortalized |
Cell Counts: | 10 million per sample |
Species Group: | Mammals |
Factors:
Subject type: Human leukemia cells; Subject species: Homo sapiens (Factor headings shown in green)
mb_sample_id | local_sample_id | Treatment |
---|---|---|
SA024328 | ut1 | - |
SA024329 | ut5 | - |
SA024330 | ut4 | - |
SA024331 | ut2 | - |
SA024332 | ut3 | - |
SA024333 | tx5 | MDH inhib |
SA024334 | tx4 | MDH inhib |
SA024335 | tx1 | MDH inhib |
SA024336 | tx2 | MDH inhib |
SA024337 | tx3 | MDH inhib |
Showing results 1 to 10 of 10 |
Collection:
Collection ID: | CO000489 |
Collection Summary: | Cells were centrifuged to remove growth media/drug and either flash frozen or washed 1x in PBS. The cells were washed for the targeted assay but not for the global assay. |
Sample Type: | cell |
Storage Conditions: | flash frozen |
Tissue Cell Quantity Taken: | 10 million per sample |
Treatment:
Treatment ID: | TR000509 |
Treatment Summary: | Cells were treated for 15hr with 1 micromolar of drug or vehicle |
Cell Growth Container: | flasks |
Cell Growth Rate: | ~24hr per division |
Cell Media: | RPMI with 10% FBS |
Cell Envir Cond: | 5% CO2 incubator |
Cell Media Lastchanged: | 15 hr |
Sample Preparation:
Sampleprep ID: | SP000502 |
Sampleprep Summary: | Amino Acid|Global |
Sampleprep Protocol Filename: | SB_OA_Assay.pdf Appendix_C_Protein_DNA_quant.pdf |
Sample Spiking: | Appendix A - Internal Standard Prep GLCMS.pdf |
Combined analysis:
Analysis ID | AN000738 |
---|---|
Analysis type | MS |
Chromatography type | Reversed phase |
Chromatography system | Thermo Dionex Ultimate 3000 |
Column | Waters Acquity BEH C18 (100 x 2mm,1.7um) |
MS Type | ESI |
MS instrument type | Triple quadrupole |
MS instrument name | Thermo Quantiva QQQ |
Ion Mode | POSITIVE |
Units | Total nmoles (with relative protein adjustment) |
Chromatography:
Chromatography ID: | CH000531 |
Chromatography Summary: | Amino acids |
Methods Filename: | SB_OA_Assay.pdf |
Instrument Name: | Thermo Dionex Ultimate 3000 |
Column Name: | Waters Acquity BEH C18 (100 x 2mm,1.7um) |
Column Temperature: | 45 |
Flow Rate: | 0.3 mL/min |
Solvent A: | 100% water; 0.1% formic acid |
Solvent B: | 100% acetonitrile; 0.1% formic acid |
Chromatography Type: | Reversed phase |
MS:
MS ID: | MS000655 |
Analysis ID: | AN000738 |
Instrument Name: | Thermo Quantiva QQQ |
Instrument Type: | Triple quadrupole |
MS Type: | ESI |
Ion Mode: | POSITIVE |