Summary of Study ST000611

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000447. The data can be accessed directly via it's Project DOI: 10.21228/M88P55 This work is supported by NIH grant, U2C- DK119886.

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Study IDST000611
Study TitleRelative level of inosine/adenosine and sarcosine
Study SummaryLC/MS-MS measurement of inosine to adenosine ratio as well as GC/MS measurement of sarcosine relative values in urine samples from prostate cancer and case control patients in a group of ancestry verified African American and European American.
Institute
Baylor College of Medicine
Last NameSreekumar
First NameArun
AddressOne Baylor Plaza, 120D, Houston, TX, 77030
EmailArun.Sreekumar@bcm.edu
Phone713-798-3305
Submit Date2017-05-19
Analysis Type DetailLC-MS
Release Date2019-07-17
Release Version1
Arun Sreekumar Arun Sreekumar
https://dx.doi.org/10.21228/M88P55
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR000447
Project DOI:doi: 10.21228/M88P55
Project Title:Prostate cancer disparity study on urine
Project Summary:LC/MS-MS measurement of inosine to adenosine ratio as well as GC/MS measurement of sarcosine relative values in urine samples from
Institute:Baylor College of Medicine
Last Name:Sreekumar
First Name:Arun
Address:One Baylor Plaza, Houston, TX, 77030, USA
Email:Arun.Sreekumar@bcm.edu
Phone:713-798-3305

Subject:

Subject ID:SU000634
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id group RACE
SA03359819223Cancer African American
SA03359919205Cancer African American
SA03360019236Cancer African American
SA03360119192Cancer African American
SA03360219402Cancer African American
SA03360319515Cancer African American
SA03360419428Cancer African American
SA03360519144Cancer African American
SA03360619379Cancer African American
SA03360719064Cancer African American
SA03360818640Cancer African American
SA03360918567Cancer African American
SA03361018538Cancer African American
SA03361118765Cancer African American
SA03361218893Cancer African American
SA03361319580Cancer African American
SA03361418970Cancer African American
SA03361518939Cancer African American
SA03361619139Cancer African American
SA03361719644Cancer African American
SA03361820262Cancer African American
SA03361920144Cancer African American
SA03362020120Cancer African American
SA03362120405Cancer African American
SA03362220436Cancer African American
SA03362317122Cancer African American
SA03362421042Cancer African American
SA03362520463Cancer African American
SA03362620082Cancer African American
SA03362719924Cancer African American
SA03362819682Cancer African American
SA03362919666Cancer African American
SA03363018517Cancer African American
SA03363119800Cancer African American
SA03363219815Cancer African American
SA03363319901Cancer African American
SA03363419853Cancer African American
SA03363519838Cancer African American
SA03363619641Cancer African American
SA03363719460Cancer African American
SA03363819678Cancer African American
SA03363919502Cancer African American
SA03364019418Cancer African American
SA03364119270Cancer African American
SA03364219766Cancer African American
SA03364319805Cancer African American
SA03364420149Cancer African American
SA03364520141Cancer African American
SA03364620115Cancer African American
SA03364719049Cancer African American
SA03364818998Cancer African American
SA03364918515Cancer African American
SA03365018175Cancer African American
SA03365118317Cancer African American
SA03365218331Cancer African American
SA03365318850Cancer African American
SA03365418901Cancer African American
SA03365518887Cancer African American
SA03365618882Cancer African American
SA03365715298Cancer African American
SA03365819675Cancer African American
SA03365918296Cancer African American
SA03366018234Cancer African American
SA03366118183Cancer African American
SA03366218177Cancer African American
SA03366318302Cancer African American
SA03366418378Cancer African American
SA03366518494Cancer African American
SA03366618439Cancer African American
SA03366716710Cancer African American
SA03366818115Cancer African American
SA03366918414Cancer African American
SA03367018097Cancer African American
SA03367117897Cancer African American
SA03367217891Cancer African American
SA03367318020Cancer African American
SA03367417985Cancer African American
SA03367517234Cancer African American
SA03367618073Cancer African American
SA03367718064Cancer African American
SA03367820101Cancer European American
SA03367920406Cancer European American
SA03368020285Cancer European American
SA03368119834Cancer European American
SA03368219312Cancer European American
SA03368320694Cancer European American
SA03368419870Cancer European American
SA03368520020Cancer European American
SA03368620036Cancer European American
SA03368718834Cancer European American
SA03368818775Cancer European American
SA03368918737Cancer European American
SA03369019274Cancer European American
SA03369118803Cancer European American
SA03369218811Cancer European American
SA03369318876Cancer European American
SA03369418865Cancer European American
SA03369518724Cancer European American
SA03369618890Cancer European American
SA03369718955Cancer European American
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Collection:

Collection ID:CO000628
Collection Summary:Urine from 80 each of ancestry typed AA and EA prostate cancer patients were used for this analysis. Urine specimens were spun and the supernatant was stored at −70°C until analysis.
Sample Type:Urine

Treatment:

Treatment ID:TR000648
Treatment Summary:NA

Sample Preparation:

Sampleprep ID:SP000641
Sampleprep Summary:10uL urine supernatant was mixed with 40 uL of an equimolar mixture containing two standard compounds ([15N] Tryptophan and Zeatine) in an equal volume of water and methanol prior to LC-MS analysis.

Combined analysis:

Analysis ID AN000936
Analysis type MS
Chromatography type Reversed phase
Chromatography system Agilent 1290 Infinity
Column Agilent SB-CN RRHD (100 x 3.0mm,1.8um)
MS Type ESI
MS instrument type Triple quadrupole
MS instrument name Agilent
Ion Mode POSITIVE
Units uM

Chromatography:

Chromatography ID:CH000667
Instrument Name:Agilent 1290 Infinity
Column Name:Agilent SB-CN RRHD (100 x 3.0mm,1.8um)
Chromatography Type:Reversed phase

MS:

MS ID:MS000832
Analysis ID:AN000936
Instrument Name:Agilent
Instrument Type:Triple quadrupole
MS Type:ESI
Ion Mode:POSITIVE
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