Summary of Study ST000663

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000466. The data can be accessed directly via it's Project DOI: 10.21228/M8TG86 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  
Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data files (Contains raw data)
Study IDST000663
Study TitleMetabolic Syndrome Plasma Lipidomics
Study TypeMS analysis
Study SummaryPlasma of metabolic syndrome patients will be checked for lipidomic profiles
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-05
Num Groups5
Total Subjects20
Raw Data AvailableYes
Raw Data File Type(s)wiff
Analysis Type DetailLC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8TG86
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000466
Project DOI:doi: 10.21228/M8TG86
Project Title:Metabolic Syndrome Studies
Project Type:MS analysis
Project Summary:Plasma lipidomics
Institute:University of Michigan
Department:UMich Internal Medicine
Laboratory:Pennathur Lab
Last Name:Pennathur
First Name:Subramaniam
Address:University Michigan, 2900 Huron Parkway, Ann Arbor, MI 48105
Email:spennath@umich.edu
Phone:734 615 5757

Subject:

Subject ID:SU000686
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id control visit
SA038157S00015580Control Control
SA038158S00015581Control Control
SA038159S00015578Control Control
SA038160S00015572Control Control
SA038161S00015579Control Control
SA038162S00015574Control Control
SA038163S00015573Control Control
SA038164S00015577Control Control
SA038165S00015575Control Control
SA038166S00015576Control Control
SA038167S00015606Metabolic syndrom MS Visit 1
SA038168S00015591Metabolic syndrom MS Visit 1
SA038169S00015603Metabolic syndrom MS Visit 1
SA038170S00015588Metabolic syndrom MS Visit 1
SA038171S00015582Metabolic syndrom MS Visit 1
SA038172S00015597Metabolic syndrom MS Visit 1
SA038173S00015585Metabolic syndrom MS Visit 1
SA038174S00015600Metabolic syndrom MS Visit 1
SA038175S00015609Metabolic syndrom MS Visit 1
SA038176S00015594Metabolic syndrom MS Visit 1
SA038177S00015601Metabolic syndrom MS Visit 3
SA038178S00015610Metabolic syndrom MS Visit 3
SA038179S00015598Metabolic syndrom MS Visit 3
SA038180S00015607Metabolic syndrom MS Visit 3
SA038181S00015604Metabolic syndrom MS Visit 3
SA038182S00015592Metabolic syndrom MS Visit 3
SA038183S00015589Metabolic syndrom MS Visit 3
SA038184S00015586Metabolic syndrom MS Visit 3
SA038185S00015595Metabolic syndrom MS Visit 3
SA038186S00015583Metabolic syndrom MS Visit 3
SA038187S00015608Metabolic syndrom MS Visit 4
SA038188S00015611Metabolic syndrom MS Visit 4
SA038189S00015587Metabolic syndrom MS Visit 4
SA038190S00015584Metabolic syndrom MS Visit 4
SA038191S00015605Metabolic syndrom MS Visit 4
SA038192S00015596Metabolic syndrom MS Visit 4
SA038193S00015602Metabolic syndrom MS Visit 4
SA038194S00015593Metabolic syndrom MS Visit 4
SA038195S00015590Metabolic syndrom MS Visit 4
SA038196S00015599Metabolic syndrom MS Visit 4
Showing results 1 to 40 of 40

Collection:

Collection ID:CO000680
Collection Summary:-
Sample Type:Blood

Treatment:

Treatment ID:TR000700
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000693
Sampleprep Summary:-
Sampleprep Protocol Filename:A004_-_Shotgun_Lipidomics.pdf

Combined analysis:

Analysis ID AN001012 AN001013
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Shimadzu CTO-20A Nexera X2 Shimadzu CTO-20A Nexera X2
Column Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
MS Type ESI ESI
MS instrument type Triple TOF Triple TOF
MS instrument name ABI Sciex 5600+ TripleTOF ABI Sciex 5600+ TripleTOF
Ion Mode NEGATIVE POSITIVE
Units peak area normalized peak area normalized

Chromatography:

Chromatography ID:CH000726
Instrument Name:Shimadzu CTO-20A Nexera X2
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Column Temperature:55
Flow Rate:0.400uL/min
Solvent A:40% acetonitrile/60% water; 10 mM ammonium acetate
Solvent B:10% acetonitrile/5% water/85% isopropanol; 10 mM ammonium acetate
Chromatography Type:Reversed phase

MS:

MS ID:MS000907
Analysis ID:AN001012
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
  
MS ID:MS000908
Analysis ID:AN001013
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:POSITIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
  logo