Summary of Study ST000691
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000490. The data can be accessed directly via it's Project DOI: 10.21228/M8QK6J This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST000691 |
| Study Title | Metabolomics of diabetic nephropathy |
| Study Type | MS analysis |
| Study Summary | Metabolomics of diabetic plasma at baseline for Chronic Kidney Disease progression studies; all samples taken from progressors. |
| Institute | University of Michigan |
| Department | Biomedical Research Core Facilities |
| Laboratory | Metabolomics core |
| Last Name | Kachman |
| First Name | Maureen |
| Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
| mkachman@med.umich.edu | |
| Phone | (734) 232-8175 |
| Submit Date | 2017-06-19 |
| Num Groups | 2 |
| Total Subjects | 17 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | d |
| Analysis Type Detail | LC-MS |
| Release Date | 2017-12-06 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR000490 |
| Project DOI: | doi: 10.21228/M8QK6J |
| Project Title: | Diabetis and Chronic Kidney Disease progression |
| Project Type: | MS analysis |
| Project Summary: | Metabolomics of Chronic Kidney Disease progression |
| Institute: | University of Michigan |
| Department: | UMich Internal Medicine |
| Laboratory: | Pennathur Lab |
| Last Name: | Pennathur |
| First Name: | Subramaniam |
| Address: | University Michigan, 2900 Huron Parkway, Ann Arbor, MI 48105 |
| Email: | spennath@umich.edu |
| Phone: | 734 615 5757 |
Subject:
| Subject ID: | SU000714 |
| Subject Type: | Human |
| Subject Species: | Homo sapiens |
| Taxonomy ID: | 9606 |
| Species Group: | Mammals |
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | Progression |
|---|---|---|
| SA039183 | S00020129 | Pooled plasma |
| SA039184 | S00014332 | Y |
| SA039185 | S00014331 | Y |
| SA039186 | S00014333 | Y |
| SA039187 | S00014335 | Y |
| SA039188 | S00014336 | Y |
| SA039189 | S00014330 | Y |
| SA039190 | S00014334 | Y |
| SA039191 | S00014329 | Y |
| SA039192 | S00014324 | Y |
| SA039193 | S00014323 | Y |
| SA039194 | S00014322 | Y |
| SA039195 | S00014325 | Y |
| SA039196 | S00014326 | Y |
| SA039197 | S00014328 | Y |
| SA039198 | S00014327 | Y |
| SA039199 | S00014321 | Y |
| Showing results 1 to 17 of 17 |
Collection:
| Collection ID: | CO000708 |
| Collection Summary: | - |
| Sample Type: | Blood |
Treatment:
| Treatment ID: | TR000728 |
| Treatment Summary: | - |
Sample Preparation:
| Sampleprep ID: | SP000721 |
| Sampleprep Summary: | - |
| Sampleprep Protocol Filename: | A003_-_Untargeted_Metabolomics.pdf |
Combined analysis:
| Analysis ID | AN001067 | AN001068 |
|---|---|---|
| Analysis type | MS | MS |
| Chromatography type | Reversed phase | Reversed phase |
| Chromatography system | Agilent | Agilent |
| Column | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
| MS Type | ESI | ESI |
| MS instrument type | QTOF | QTOF |
| MS instrument name | Agilent 6530 QTOF | Agilent 6530 QTOF |
| Ion Mode | NEGATIVE | POSITIVE |
| Units | peak area normalized | peak area normalized |
Chromatography:
| Chromatography ID: | CH000754 |
| Instrument Name: | Agilent |
| Column Name: | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
| Chromatography Type: | Reversed phase |
MS:
| MS ID: | MS000962 |
| Analysis ID: | AN001067 |
| Instrument Name: | Agilent 6530 QTOF |
| Instrument Type: | QTOF |
| MS Type: | ESI |
| Ion Mode: | NEGATIVE |
| Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |
| MS ID: | MS000963 |
| Analysis ID: | AN001068 |
| Instrument Name: | Agilent 6530 QTOF |
| Instrument Type: | QTOF |
| MS Type: | ESI |
| Ion Mode: | POSITIVE |
| Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |
