Summary of Study ST000694
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000166. The data can be accessed directly via it's Project DOI: 10.21228/M8S01D This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST000694 |
Study Title | Differences in bile acids composition between ASCL5 knockout and floxed mice. |
Study Type | MS analysis |
Study Summary | Understand the differences in Bile Acid composition between knockout and floxed mice at each intestinal segment. Also difference in metabolites between these two groups at each level of the intestine. |
Institute | University of Michigan |
Department | Biomedical Research Core Facilities |
Laboratory | Metabolomics core |
Last Name | Kachman |
First Name | Maureen |
Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
mkachman@med.umich.edu | |
Phone | (734) 232-8175 |
Submit Date | 2017-06-19 |
Num Groups | 6 |
Total Subjects | 8 |
Raw Data Available | Yes |
Raw Data File Type(s) | d |
Analysis Type Detail | LC-MS |
Release Date | 2017-12-06 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000166 |
Project DOI: | doi: 10.21228/M8S01D |
Project Title: | ASCL5 Bile Acids Analysis |
Project Summary: | Analysis of Bile Acids in Intestinal Segments of Chow Fed Male ACSL5 Knockout Mice |
Institute: | Tufts University |
Department: | Endocrinology, Diabetes, and Metabolism |
Laboratory: | Greenberg Lab |
Last Name: | Greenberg |
First Name: | Andrew |
Address: | Medford, MA |
Email: | andrew.greenberg@tufts.edu |
Phone: | 617-556-3144 |
Subject:
Subject ID: | SU000717 |
Subject Type: | Mouse |
Subject Species: | Mus musculus |
Taxonomy ID: | 10090 |
Species Group: | Mammals |
Factors:
Subject type: Mouse; Subject species: Mus musculus (Factor headings shown in green)
mb_sample_id | local_sample_id | Genotype | Intestinal Segment |
---|---|---|---|
SA039266 | S00015224 | FLOX | Duodenum |
SA039267 | S00015218 | FLOX | Duodenum |
SA039268 | S00015209 | FLOX | Duodenum |
SA039269 | S00015233 | FLOX | Duodenum |
SA039270 | S00015215 | FLOX | Duodenum |
SA039271 | S00015236 | FLOX | Duodenum |
SA039272 | S00015239 | FLOX | Duodenum |
SA039273 | S00015200 | FLOX | Duodenum |
SA039274 | S00015211 | FLOX | Illeum |
SA039275 | S00015241 | FLOX | Illeum |
SA039276 | S00015217 | FLOX | Illeum |
SA039277 | S00015238 | FLOX | Illeum |
SA039278 | S00015235 | FLOX | Illeum |
SA039279 | S00015226 | FLOX | Illeum |
SA039280 | S00015220 | FLOX | Illeum |
SA039281 | S00015202 | FLOX | Illeum |
SA039282 | S00015219 | FLOX | Jejunum |
SA039283 | S00015225 | FLOX | Jejunum |
SA039284 | S00015237 | FLOX | Jejunum |
SA039285 | S00015201 | FLOX | Jejunum |
SA039286 | S00015216 | FLOX | Jejunum |
SA039287 | S00015234 | FLOX | Jejunum |
SA039288 | S00015210 | FLOX | Jejunum |
SA039289 | S00015240 | FLOX | Jejunum |
SA039265 | S00016589 | - | - |
SA039290 | S00015230 | Knockout | Duodenum |
SA039291 | S00015227 | Knockout | Duodenum |
SA039292 | S00015221 | Knockout | Duodenum |
SA039293 | S00015242 | Knockout | Duodenum |
SA039294 | S00015212 | Knockout | Duodenum |
SA039295 | S00015206 | Knockout | Duodenum |
SA039296 | S00015197 | Knockout | Duodenum |
SA039297 | S00015203 | Knockout | Duodenum |
SA039298 | S00015194 | Knockout | Duodenum |
SA039299 | S00015196 | Knockout | Illeum |
SA039300 | S00015244 | Knockout | Illeum |
SA039301 | S00015199 | Knockout | Illeum |
SA039302 | S00015229 | Knockout | Illeum |
SA039303 | S00015223 | Knockout | Illeum |
SA039304 | S00015232 | Knockout | Illeum |
SA039305 | S00015205 | Knockout | Illeum |
SA039306 | S00015214 | Knockout | Illeum |
SA039307 | S00015208 | Knockout | Illeum |
SA039308 | S00015195 | Knockout | Jejunum |
SA039309 | S00015213 | Knockout | Jejunum |
SA039310 | S00015243 | Knockout | Jejunum |
SA039311 | S00015222 | Knockout | Jejunum |
SA039312 | S00015231 | Knockout | Jejunum |
SA039313 | S00015228 | Knockout | Jejunum |
SA039314 | S00015204 | Knockout | Jejunum |
SA039315 | S00015207 | Knockout | Jejunum |
SA039316 | S00015198 | Knockout | Jejunum |
SA039317 | S00020138 | Pooled flushing | Pooled flushing |
Showing results 1 to 53 of 53 |
Collection:
Collection ID: | CO000711 |
Collection Summary: | - |
Sample Type: | Intestine |
Treatment:
Treatment ID: | TR000731 |
Treatment Summary: | - |
Sample Preparation:
Sampleprep ID: | SP000724 |
Sampleprep Summary: | - |
Sampleprep Protocol Filename: | A003_-_Untargeted_Metabolomics.pdf |
Combined analysis:
Analysis ID | AN001073 | AN001074 |
---|---|---|
Analysis type | MS | MS |
Chromatography type | Reversed phase | Reversed phase |
Chromatography system | Agilent | Agilent |
Column | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
MS Type | ESI | ESI |
MS instrument type | QTOF | QTOF |
MS instrument name | Agilent 6530 QTOF | Agilent 6530 QTOF |
Ion Mode | NEGATIVE | POSITIVE |
Units | peak area | peak area |
Chromatography:
Chromatography ID: | CH000757 |
Instrument Name: | Agilent |
Column Name: | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
Chromatography Type: | Reversed phase |
MS:
MS ID: | MS000968 |
Analysis ID: | AN001073 |
Instrument Name: | Agilent 6530 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
Ion Mode: | NEGATIVE |
Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |
MS ID: | MS000969 |
Analysis ID: | AN001074 |
Instrument Name: | Agilent 6530 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
Ion Mode: | POSITIVE |
Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |