Summary of Study ST000696

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000493. The data can be accessed directly via it's Project DOI: 10.21228/M8B895 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  |  Perform analysis on untargeted data  
Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data files (Contains raw data)
Study IDST000696
Study TitleBrain-Immune system-Gut Interaction in Chronic Mild Stress (CMS +/- Lacto)
Study TypeMS analysis
Study SummaryMice were devided into three groups (Naive untreated, Stressed untreated, Stressed + Lacto). The stressed groups were subjected to unpredictable chronic mild stress for seven weeks. Three weeks into the protocol, the +Lacto groups were administered probiotic Lactobacillus daily.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-19
Num Groups5
Total Subjects16
Raw Data AvailableYes
Raw Data File Type(s)d
Analysis Type DetailLC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8B895
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000493
Project DOI:doi: 10.21228/M8B895
Project Title:Brain-Immune system-Gut Interaction Studies
Project Type:MS analysis
Project Summary:Brain-Immune system-Gut Interaction in Chronic Mild Stress
Institute:University of Virginia
Department:Neuroscience
Laboratory:Kipnis Lab
Last Name:Kipnis
First Name:Jonathan
Address:Charlottesville, VA
Email:kipnis@virginia.edu
Phone:434-982-3858

Subject:

Subject ID:SU000719
Subject Type:Mouse
Subject Species:Mus musculus
Taxonomy ID:10090
Species Group:Mammals

Factors:

Subject type: Mouse; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id stress treatment
SA039419S00016738N None
SA039420S00016742N None
SA039421S00016741N None
SA039422S00016740N None
SA039423S00016739N None
SA039424S00017167POOLED POOLED
SA039425S00016749Y +Lacto
SA039426S00016748Y +Lacto
SA039427S00016751Y +Lacto
SA039428S00016750Y +Lacto
SA039429S00016752Y +Lacto
SA039430S00016746Y None
SA039431S00016743Y None
SA039432S00016744Y None
SA039433S00016745Y None
SA039434S00016747Y None
Showing results 1 to 16 of 16

Collection:

Collection ID:CO000713
Collection Summary:-

Treatment:

Treatment ID:TR000733
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000726
Sampleprep Summary:-
Sampleprep Protocol Filename:A003_-_Untargeted_Metabolomics.pdf

Combined analysis:

Analysis ID AN001079 AN001080
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Agilent Agilent
Column Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
MS Type ESI ESI
MS instrument type QTOF QTOF
MS instrument name Agilent 6530 QTOF Agilent 6530 QTOF
Ion Mode NEGATIVE POSITIVE
Units peak area peak area

Chromatography:

Chromatography ID:CH000760
Instrument Name:Agilent
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Chromatography Type:Reversed phase

MS:

MS ID:MS000974
Analysis ID:AN001079
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:A003_-_Untargeted_Metabolomics.pdf
  
MS ID:MS000975
Analysis ID:AN001080
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:POSITIVE
Analysis Protocol File:A003_-_Untargeted_Metabolomics.pdf
  logo