Summary of Study ST000703

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000500. The data can be accessed directly via it's Project DOI: 10.21228/M81M3J This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

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Study IDST000703
Study TitleShort chain Fatty Acid (SCFA) analysis in HIV patients
Study TypeMS analysis
Study SummaryWe hypothesize that a microbiome enriched with anaerobes in HIV leads to SCFA production and immunomodulatory effects. The goal of the experiment is evaluating bacterial metabolic pathways leading to production of SCFA. DLCO stands for Diffusing capacity of the lungs for carbon monoxide.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-19
Num Groups2
Total Subjects213
Raw Data AvailableYes
Raw Data File Type(s)d
Analysis Type DetailGC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M81M3J
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000500
Project DOI:doi: 10.21228/M81M3J
Project Title:HIV Microbiome and Short Chain Fatty Acids and immunomodulation
Project Type:MS analysis
Project Summary:We hypothesize that a microbiome enriched with anaerobes in HIV leads to SCFA production and immunomodulatory effects.
Institute:New York University
Department:School of Medicine
Laboratory:Segal Lab
Last Name:Segal
First Name:Leopoldo
Address:New York
Email:leopoldo.segal@nyumc.org
Phone:212-263-6479

Subject:

Subject ID:SU000726
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id DLCO
SA039552S00020338-
SA039553S00019493High
SA039554S00019494High
SA039555S00019498High
SA039556S00019492High
SA039557S00019497High
SA039558S00019490High
SA039559S00019488High
SA039560S00019489High
SA039561S00019499High
SA039562S00019491High
SA039563S00019501High
SA039564S00019509High
SA039565S00019511High
SA039566S00019512High
SA039567S00019508High
SA039568S00019507High
SA039569S00019487High
SA039570S00019503High
SA039571S00019506High
SA039572S00019500High
SA039573S00019484High
SA039574S00019464High
SA039575S00019465High
SA039576S00019466High
SA039577S00019468High
SA039578S00019463High
SA039579S00019461High
SA039580S00019456High
SA039581S00019457High
SA039582S00019459High
SA039583S00019469High
SA039584S00019471High
SA039585S00019481High
SA039586S00019482High
SA039587S00019513High
SA039588S00019480High
SA039589S00019478High
SA039590S00019473High
SA039591S00019474High
SA039592S00019370High
SA039593S00019485High
SA039594S00019515High
SA039595S00019558High
SA039596S00019559High
SA039597S00019560High
SA039598S00019561High
SA039599S00019557High
SA039600S00019555High
SA039601S00019546High
SA039602S00019552High
SA039603S00019554High
SA039604S00019562High
SA039605S00019563High
SA039606S00019578High
SA039607S00019580High
SA039608S00019581High
SA039609S00019576High
SA039610S00019572High
SA039611S00019566High
SA039612S00019569High
SA039613S00019571High
SA039614S00019545High
SA039615S00019544High
SA039616S00019521High
SA039617S00019522High
SA039618S00019524High
SA039619S00019526High
SA039620S00019519High
SA039621S00019518High
SA039622S00019455High
SA039623S00019516High
SA039624S00019517High
SA039625S00019527High
SA039626S00019528High
SA039627S00019538High
SA039628S00019540High
SA039629S00019543High
SA039630S00019535High
SA039631S00019532High
SA039632S00019529High
SA039633S00019530High
SA039634S00019531High
SA039635S00019514High
SA039636S00019476High
SA039637S00019410High
SA039638S00019412High
SA039639S00019413High
SA039640S00019409High
SA039641S00019454High
SA039642S00019402High
SA039643S00019403High
SA039644S00019414High
SA039645S00019416High
SA039646S00019425High
SA039647S00019426High
SA039648S00019427High
SA039649S00019421High
SA039650S00019420High
SA039651S00019418High
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Collection:

Collection ID:CO000720
Collection Summary:-

Treatment:

Treatment ID:TR000740
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000733
Sampleprep Summary:-
Sampleprep Protocol Filename:A007_-_Short_Chain_Fatty_Acids.pdf

Combined analysis:

Analysis ID AN001093
Analysis type MS
Chromatography type GC
Chromatography system Agilent 7890N
Column Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um)
MS Type EI
MS instrument type Single quadrupole
MS instrument name Agilent 5975
Ion Mode POSITIVE
Units uM

Chromatography:

Chromatography ID:CH000768
Instrument Name:Agilent 7890N
Column Name:Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um)
Chromatography Type:GC

MS:

MS ID:MS000988
Analysis ID:AN001093
Instrument Name:Agilent 5975
Instrument Type:Single quadrupole
MS Type:EI
Ion Mode:POSITIVE
Analysis Protocol File:A007_-_Short_Chain_Fatty_Acids.pdf
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