Summary of Study ST000711
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000508. The data can be accessed directly via it's Project DOI: 10.21228/M80M4M This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST000711 |
| Study Title | Microbial ecology of nontuberculous mycobacteria (NTM) in cystic fibrosis (CF) sputum |
| Study Type | MS analysis |
| Study Summary | These are sputum samples collected from 8 individuals with cystic fibrosis during the course of routine clinical care. They were initially stored at 4C for up to 24 hours then stored at -80C. No processing has been done to the sputum prior to freezing. For each individual there are sputum samples collected both before and after the individual had his or her first positive sputum culture for nontuberculous mycobacteria (NTM). The individuals experienced different clinical courses after their infection. |
| Institute | University of Michigan |
| Department | Biomedical Research Core Facilities |
| Laboratory | Metabolomics core |
| Last Name | Kachman |
| First Name | Maureen |
| Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
| mkachman@med.umich.edu | |
| Phone | (734) 232-8175 |
| Submit Date | 2017-06-19 |
| Num Groups | 2 |
| Total Subjects | 8 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | d |
| Analysis Type Detail | LC-MS |
| Release Date | 2017-12-06 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR000508 |
| Project DOI: | doi: 10.21228/M80M4M |
| Project Title: | NTM microbial ecology |
| Project Type: | MS analysis |
| Project Summary: | Microbial ecology of NTM in CF sputum |
| Institute: | University of Michigan |
| Department: | Pediatrics |
| Laboratory: | Caverly Lab |
| Last Name: | Caverly |
| First Name: | Lindsay |
| Address: | Ann Arbor, MI |
| Email: | caverlyl@med.umich.edu |
| Phone: | 303-587-1406 |
Subject:
| Subject ID: | SU000734 |
| Subject Type: | Human |
| Subject Species: | Homo sapiens |
| Taxonomy ID: | 9606 |
| Species Group: | Human |
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | M. abscessus | NTM pulmonary disease | pre-infection sample |
|---|---|---|---|---|
| SA040056 | S00022364 | no | no | no |
| SA040057 | S00022366 | no | no | no |
| SA040058 | S00022363 | no | no | yes |
| SA040059 | S00022365 | no | no | yes |
| SA040060 | S00022356 | no | yes | no |
| SA040061 | S00022368 | no | yes | no |
| SA040062 | S00022353 | no | yes | no |
| SA040063 | S00022357 | no | yes | no |
| SA040064 | S00022348 | no | yes | no |
| SA040065 | S00022350 | no | yes | no |
| SA040066 | S00022354 | no | yes | yes |
| SA040067 | S00022351 | no | yes | yes |
| SA040068 | S00022367 | no | yes | yes |
| SA040069 | S00022347 | no | yes | yes |
| SA040070 | S00022355 | no | yes | yes |
| SA040071 | S00022352 | no | yes | yes |
| SA040072 | S00022345 | no | yes | yes |
| SA040073 | S00022346 | no | yes | yes |
| SA040074 | S00022349 | no | yes | yes |
| SA040075 | S00022361 | yes | yes | no |
| SA040076 | S00022362 | yes | yes | no |
| SA040077 | S00022358 | yes | yes | yes |
| SA040078 | S00022360 | yes | yes | yes |
| SA040079 | S00022359 | yes | yes | yes |
| Showing results 1 to 24 of 24 |
Collection:
| Collection ID: | CO000728 |
| Collection Summary: | - |
| Sample Type: | Sputum |
Treatment:
| Treatment ID: | TR000748 |
| Treatment Summary: | - |
Sample Preparation:
| Sampleprep ID: | SP000741 |
| Sampleprep Summary: | - |
| Sampleprep Protocol Filename: | A003_-_Untargeted_Metabolomics.pdf |
Combined analysis:
| Analysis ID | AN001110 | AN001111 |
|---|---|---|
| Analysis type | MS | MS |
| Chromatography type | Reversed phase | Reversed phase |
| Chromatography system | Agilent | Agilent |
| Column | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
| MS Type | ESI | ESI |
| MS instrument type | QTOF | QTOF |
| MS instrument name | Agilent 6530 QTOF | Agilent 6530 QTOF |
| Ion Mode | NEGATIVE | POSITIVE |
| Units | peak area | peak area normalized |
Chromatography:
| Chromatography ID: | CH000780 |
| Instrument Name: | Agilent |
| Column Name: | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
| Chromatography Type: | Reversed phase |
MS:
| MS ID: | MS001005 |
| Analysis ID: | AN001110 |
| Instrument Name: | Agilent 6530 QTOF |
| Instrument Type: | QTOF |
| MS Type: | ESI |
| Ion Mode: | NEGATIVE |
| Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |
| MS ID: | MS001006 |
| Analysis ID: | AN001111 |
| Instrument Name: | Agilent 6530 QTOF |
| Instrument Type: | QTOF |
| MS Type: | ESI |
| Ion Mode: | POSITIVE |
| Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |
