Summary of Study ST000714
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000511. The data can be accessed directly via it's Project DOI: 10.21228/M8MD5H This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST000714 |
Study Title | Effect of genetic lesions on glioblastoma (NP, NPA, NPAI, NS) |
Study Type | MS analysis |
Study Summary | The cells in this experiment are primary cells derived from tumors with various genetic lesions. The purpose of this experiment is to determine the effect of the genetic lesion IDH1m (mutant isocitrate dehydrogenase) on the metabolic state of the cell. Four replicates of NPA versus four replicates of NPAI suspension cell neurospheres will be compared in an untargeted manner to identify all possible metabolic differences between the two types of genetic lesions. |
Institute | University of Michigan |
Department | Biomedical Research Core Facilities |
Laboratory | Metabolomics core |
Last Name | Kachman |
First Name | Maureen |
Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
mkachman@med.umich.edu | |
Phone | (734) 232-8175 |
Submit Date | 2017-06-19 |
Num Groups | 2 |
Total Subjects | 1 |
Raw Data Available | Yes |
Raw Data File Type(s) | d |
Analysis Type Detail | LC-MS |
Release Date | 2017-12-06 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000511 |
Project DOI: | doi: 10.21228/M8MD5H |
Project Title: | Young adult glioblastoma |
Project Type: | MS analysis |
Project Summary: | Effect of genetic lesions on glioblastoma |
Institute: | University of Michigan |
Department: | Neurosurgery |
Laboratory: | Castro Lab |
Last Name: | Castro |
First Name: | Maria |
Address: | Ann Arbor, MI |
Email: | mariacas@umich.edu |
Phone: | 734-764-0850 |
Subject:
Subject ID: | SU000737 |
Subject Type: | Mouse |
Subject Species: | Mus musculus |
Taxonomy ID: | 10090 |
Species Group: | Mammals |
Factors:
Subject type: Mouse; Subject species: Mus musculus (Factor headings shown in green)
mb_sample_id | local_sample_id | IDh1 mutation |
---|---|---|
SA040121 | S00022549 | NPA |
SA040122 | S00022552 | NPA |
SA040123 | S00022551 | NPA |
SA040124 | S00022550 | NPA |
SA040125 | S00022556 | NPAI |
SA040126 | S00022553 | NPAI |
SA040127 | S00022554 | NPAI |
SA040128 | S00022555 | NPAI |
Showing results 1 to 8 of 8 |
Collection:
Collection ID: | CO000731 |
Collection Summary: | - |
Sample Type: | Tumor cells |
Treatment:
Treatment ID: | TR000751 |
Treatment Summary: | - |
Sample Preparation:
Sampleprep ID: | SP000744 |
Sampleprep Summary: | - |
Sampleprep Protocol Filename: | A003_-_Untargeted_Metabolomics.pdf |
Combined analysis:
Analysis ID | AN001117 | AN001118 |
---|---|---|
Analysis type | MS | MS |
Chromatography type | Reversed phase | Reversed phase |
Chromatography system | Agilent | Agilent |
Column | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
MS Type | ESI | ESI |
MS instrument type | QTOF | QTOF |
MS instrument name | Agilent 6530 QTOF | Agilent 6530 QTOF |
Ion Mode | NEGATIVE | POSITIVE |
Units | peak area | peak area |
Chromatography:
Chromatography ID: | CH000784 |
Instrument Name: | Agilent |
Column Name: | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
Chromatography Type: | Reversed phase |
MS:
MS ID: | MS001012 |
Analysis ID: | AN001117 |
Instrument Name: | Agilent 6530 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
Ion Mode: | NEGATIVE |
Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |
MS ID: | MS001013 |
Analysis ID: | AN001118 |
Instrument Name: | Agilent 6530 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
Ion Mode: | POSITIVE |
Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |