Summary of Study ST000728

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench,, where it has been assigned Project ID PR000525. The data can be accessed directly via it's Project DOI: 10.21228/M8T09R This work is supported by NIH grant, U2C- DK119886.


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Study IDST000728
Study TitleEffects of bariatric and antibiotic treatment surgery on mammary carcinogenesis
Study TypeMS analysis
Study SummaryThe purpose of this study is to understand the effects of bariatric surgery on mammary carcinogenesis in C3 Tag (1) mouse model. My animals have gone through antibiotic treatments in drinking water vs. no abx in their water. Also animals have been though vertical sleeve gasteroctomy (VSG) vs sham surgery vs no surgery group. It is expected that these surgeries will affect the tumor proliferation and growth. One potential explanation can be the changes of SCFAs following the bariatric surgery.
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Phone(734) 232-8175
Submit Date2017-06-19
Num Groups5
Total Subjects36
Raw Data AvailableYes
Raw Data File Type(s)d
Analysis Type DetailGC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman application/zip

Select appropriate tab below to view additional metadata details:


Project ID:PR000525
Project DOI:doi: 10.21228/M8T09R
Project Title:Antibiotic treatments and Breast Cancer
Project Type:MS analysis
Project Summary:Breast cancer model mouse have gone through bariatric surgery and antibiotics treatments.
Institute:University of Michigan
Laboratory:Seeley Lab
Last Name:Seeley
First Name:Randy
Address:Ann Arbor, MI


Subject ID:SU000751
Subject Type:Mouse
Subject Species:Mus musculus
Taxonomy ID:10090
Species Group:Mammal


Subject type: Mouse; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id Antibiotic Surgery
SA040848S00024605no NONE
SA040849S00024607no NONE
SA040850S00024606no NONE
SA040851S00024608no NONE
SA040852S00024609no NONE
SA040853S00024596no SHAM
SA040854S00024597no SHAM
SA040855S00024595no SHAM
SA040856S00024594no SHAM
SA040857S00024593no SHAM
SA040858S00024598no VSG
SA040859S00024603no VSG
SA040860S00024604no VSG
SA040861S00024602no VSG
SA040862S00024601no VSG
SA040863S00024600no VSG
SA040864S00024599no VSG
SA040865S00024592yes NONE
SA040866S00024588yes NONE
SA040867S00024589yes NONE
SA040868S00024587yes NONE
SA040869S00024590yes NONE
SA040870S00024591yes NONE
SA040871S00024578yes SHAM
SA040872S00024579yes SHAM
SA040873S00024577yes SHAM
SA040874S00024576yes SHAM
SA040875S00024574yes SHAM
SA040876S00024575yes SHAM
SA040877S00024580yes VSG
SA040878S00024584yes VSG
SA040879S00024586yes VSG
SA040880S00024585yes VSG
SA040881S00024583yes VSG
SA040882S00024582yes VSG
SA040883S00024581yes VSG
Showing results 1 to 36 of 36


Collection ID:CO000745
Collection Summary:-


Treatment ID:TR000765
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000758
Sampleprep Summary:-
Sampleprep Protocol Filename:A007_-_Short_Chain_Fatty_Acids.pdf

Combined analysis:

Analysis ID AN001141
Analysis type MS
Chromatography type GC
Chromatography system Agilent 7890N
Column Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um)
MS Type EI
MS instrument type Single quadrupole
MS instrument name Agilent 5975
Units uM


Chromatography ID:CH000801
Instrument Name:Agilent 7890N
Column Name:Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um)
Chromatography Type:GC


MS ID:MS001036
Analysis ID:AN001141
Instrument Name:Agilent 5975
Instrument Type:Single quadrupole
MS Type:EI
Analysis Protocol File:A007_-_Short_Chain_Fatty_Acids.pdf