Summary of Study ST000733

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000530. The data can be accessed directly via it's Project DOI: 10.21228/M8566S This work is supported by NIH grant, U2C- DK119886.

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Study IDST000733
Study TitleMicrobial changes following fecal microbiota transplantation in patients with recurrent C. difficile infection
Study TypeMS analysis
Study SummaryFecal samples were collected from patients with recurrent Clostridium difficile infection before and after treatment with fecal microbiota transplantation. Fecal samples were frozen immediately after collections, and later put into ~50mg aliquots for later analysis (at -80 C).
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-19
Num Groups21
Total Subjects11
Raw Data AvailableYes
Raw Data File Type(s)d
Analysis Type DetailGC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8566S
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000530
Project DOI:doi: 10.21228/M8566S
Project Title:Microbial changes following fecal microbiota transplantation (FMT) in patients with Clostridium difficile
Project Type:MS analysis
Project Summary:Microbial changes following fecal microbiota transplantation in patients with recurrent Clostridium difficile infection
Institute:University of Michigan
Department:Internal Medicine
Laboratory:Young Lab
Last Name:Young
First Name:Vincent
Address:Ann Arbor, MI
Email:youngvi@med.umich.edu
Phone:734-764-2237

Subject:

Subject ID:SU000756
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Mammals

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id patient type sample type
SA040950S00022763donor donor
SA040951S00022757donor donor
SA040952S00022771donor donor
SA040953S00022778donor donor
SA040954S00022779donor donor
SA040955S00022756donor donor
SA040956S00022772donor donor
SA040957S00022764donor donor
SA040958S00022749donor donor
SA040959S00022748donor donor
SA040960S00022774recipient post
SA040961S00022775recipient post
SA040962S00022746recipient post
SA040963S00022770recipient post
SA040964S00022747recipient post
SA040965S00022776recipient post
SA040966S00022745recipient post
SA040967S00022784recipient post
SA040968S00022785recipient post
SA040969S00022783recipient post
SA040970S00022782recipient post
SA040971S00022769recipient post
SA040972S00022744recipient post
SA040973S00022777recipient post
SA040974S00022768recipient post
SA040975S00022761recipient post
SA040976S00022760recipient post
SA040977S00022755recipient post
SA040978S00022762recipient post
SA040979S00022754recipient post
SA040980S00022767recipient post
SA040981S00022752recipient post
SA040982S00022753recipient post
SA040983S00022781recipient pre
SA040984S00022743recipient pre
SA040985S00022780recipient pre
SA040986S00022759recipient pre
SA040987S00022765recipient pre
SA040988S00022766recipient pre
SA040989S00022742recipient pre
SA040990S00022773recipient pre
SA040991S00022758recipient pre
SA040992S00022751recipient pre
SA040993S00022750recipient pre
Showing results 1 to 44 of 44

Collection:

Collection ID:CO000750
Collection Summary:-
Sample Type:Feces

Treatment:

Treatment ID:TR000770
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000763
Sampleprep Summary:-
Sampleprep Protocol Filename:A007_-_Short_Chain_Fatty_Acids.pdf

Combined analysis:

Analysis ID AN001147
Analysis type MS
Chromatography type GC
Chromatography system Agilent 7890N
Column Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um)
MS Type EI
MS instrument type Single quadrupole
MS instrument name Agilent 5975
Ion Mode POSITIVE
Units nmol/mg

Chromatography:

Chromatography ID:CH000807
Instrument Name:Agilent 7890N
Column Name:Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um)
Chromatography Type:GC

MS:

MS ID:MS001042
Analysis ID:AN001147
Instrument Name:Agilent 5975
Instrument Type:Single quadrupole
MS Type:EI
Ion Mode:POSITIVE
Analysis Protocol File:A007_-_Short_Chain_Fatty_Acids.pdf
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