Summary of Study ST000746
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000538. The data can be accessed directly via it's Project DOI: 10.21228/M84687 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST000746 |
Study Title | Metabolomics of mice inoculated with human stool (part II) |
Study Type | MS analysis |
Study Summary | Blood was collected from the facial vein of humanized mice immediately prior to euthansia via CO2 inhalation. Blood sat at room temperature for 20 minutes, and then was centrifuged at 12000g for 10 minutes at 4 C. Serum was removed to a new eppendorf tube and immediately placed on ice, and then samples were subsequently stored at - 20 C until the present. |
Institute | University of Michigan |
Department | Biomedical Research Core Facilities |
Laboratory | Metabolomics core |
Last Name | Kachman |
First Name | Maureen |
Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
mkachman@med.umich.edu | |
Phone | (734) 232-8175 |
Submit Date | 2017-06-19 |
Num Groups | 7 |
Total Subjects | 2 |
Raw Data Available | Yes |
Raw Data File Type(s) | d |
Analysis Type Detail | LC-MS |
Release Date | 2017-12-06 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000538 |
Project DOI: | doi: 10.21228/M84687 |
Project Title: | Metabolomics of mice inoculated with human microbiota |
Project Type: | MS analysis |
Project Summary: | Metabolomics of mice inoculated with human microbiota |
Institute: | Cornell University |
Department: | Microbiology |
Laboratory: | Ley Lab |
Last Name: | Ley |
First Name: | Ruth |
Address: | Ithaca, NY |
Email: | rel222@cornell.edu |
Phone: | 607-255-4954 |
Subject:
Subject ID: | SU000769 |
Subject Type: | Mouse |
Subject Species: | Mus musculus |
Taxonomy ID: | 10090 |
Species Group: | Mammals |
Factors:
Subject type: Mouse; Subject species: Mus musculus (Factor headings shown in green)
mb_sample_id | local_sample_id | Treatment Group |
---|---|---|
SA041355 | S00014432 | minus |
SA041356 | S00014433 | minus |
SA041357 | S00014434 | minus |
SA041358 | S00014431 | minus |
SA041359 | S00014428 | minus |
SA041360 | S00014435 | minus |
SA041361 | S00014429 | minus |
SA041362 | S00014430 | minus |
SA041363 | S00014440 | minus |
SA041364 | S00014442 | minus |
SA041365 | S00014441 | minus |
SA041366 | S00014443 | minus |
SA041314 | S00014478 | NH |
SA041315 | S00014467 | NH |
SA041316 | S00014477 | NH |
SA041317 | S00014476 | NH |
SA041318 | S00014466 | NH |
SA041319 | S00014482 | NH |
SA041320 | S00014479 | NH |
SA041321 | S00014486 | NH |
SA041322 | S00014485 | NH |
SA041323 | S00014484 | NH |
SA041324 | S00014483 | NH |
SA041325 | S00014487 | NH |
SA041326 | S00014464 | NL |
SA041327 | S00014465 | NL |
SA041328 | S00014463 | NL |
SA041329 | S00014460 | NL |
SA041330 | S00014454 | NL |
SA041331 | S00014459 | NL |
SA041332 | S00014461 | NL |
SA041333 | S00014462 | NL |
SA041334 | S00014473 | OH |
SA041335 | S00014474 | OH |
SA041336 | S00014475 | OH |
SA041337 | S00014480 | OH |
SA041338 | S00014481 | OH |
SA041339 | S00014468 | OH |
SA041340 | S00014472 | OH |
SA041341 | S00014469 | OH |
SA041342 | S00014470 | OH |
SA041343 | S00014471 | OH |
SA041344 | S00014458 | OL |
SA041345 | S00014457 | OL |
SA041346 | S00014456 | OL |
SA041347 | S00014450 | OL |
SA041348 | S00014449 | OL |
SA041349 | S00014451 | OL |
SA041350 | S00014448 | OL |
SA041351 | S00014452 | OL |
SA041352 | S00014455 | OL |
SA041353 | S00014453 | OL |
SA041367 | S00014427 | plus |
SA041368 | S00014446 | plus |
SA041369 | S00014426 | plus |
SA041370 | S00014447 | plus |
SA041371 | S00014425 | plus |
SA041372 | S00014445 | plus |
SA041373 | S00014444 | plus |
SA041374 | S00014424 | plus |
SA041375 | S00014436 | plus |
SA041376 | S00014437 | plus |
SA041377 | S00014438 | plus |
SA041378 | S00014439 | plus |
SA041354 | S00020131 | Pooled serum |
Showing results 1 to 65 of 65 |
Collection:
Collection ID: | CO000763 |
Collection Summary: | - |
Sample Type: | Blood |
Treatment:
Treatment ID: | TR000783 |
Treatment Summary: | - |
Sample Preparation:
Sampleprep ID: | SP000776 |
Sampleprep Summary: | - |
Sampleprep Protocol Filename: | A003_-_Untargeted_Metabolomics.pdf |
Combined analysis:
Analysis ID | AN001169 | AN001170 |
---|---|---|
Analysis type | MS | MS |
Chromatography type | Reversed phase | Reversed phase |
Chromatography system | Agilent | Agilent |
Column | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
MS Type | ESI | ESI |
MS instrument type | QTOF | QTOF |
MS instrument name | Agilent 6530 QTOF | Agilent 6530 QTOF |
Ion Mode | NEGATIVE | POSITIVE |
Units | peak area | peak area |
Chromatography:
Chromatography ID: | CH000822 |
Instrument Name: | Agilent |
Column Name: | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
Chromatography Type: | Reversed phase |
MS:
MS ID: | MS001064 |
Analysis ID: | AN001169 |
Instrument Name: | Agilent 6530 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
Ion Mode: | NEGATIVE |
Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |
MS ID: | MS001065 |
Analysis ID: | AN001170 |
Instrument Name: | Agilent 6530 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
Ion Mode: | POSITIVE |
Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |