Summary of Study ST000747
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000538. The data can be accessed directly via it's Project DOI: 10.21228/M84687 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST000747 |
Study Title | Metabolomics of mice inoculated with human stool (part III). |
Study Type | MS analysis |
Study Summary | Mice were inoculated with human stool samples from donors in a high gene copy number group or low gene copy number group. After several weeks, cecal contents were collected and frozen at -80. Aliquots were made on dry ice and then stored at -80 until shipment on dry ice. Analysis of short chain fatty acids (SCFA) of cecal content was performed. |
Institute | University of Michigan |
Department | Biomedical Research Core Facilities |
Laboratory | Metabolomics core |
Last Name | Kachman |
First Name | Maureen |
Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
mkachman@med.umich.edu | |
Phone | (734) 232-8175 |
Submit Date | 2017-06-19 |
Num Groups | 56 |
Total Subjects | 43 |
Raw Data Available | Yes |
Raw Data File Type(s) | d |
Analysis Type Detail | GC-MS |
Release Date | 2017-12-06 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000538 |
Project DOI: | doi: 10.21228/M84687 |
Project Title: | Metabolomics of mice inoculated with human microbiota |
Project Type: | MS analysis |
Project Summary: | Metabolomics of mice inoculated with human microbiota |
Institute: | Cornell University |
Department: | Microbiology |
Laboratory: | Ley Lab |
Last Name: | Ley |
First Name: | Ruth |
Address: | Ithaca, NY |
Email: | rel222@cornell.edu |
Phone: | 607-255-4954 |
Subject:
Subject ID: | SU000770 |
Subject Type: | Mouse |
Subject Species: | Mus musculus |
Taxonomy ID: | 10090 |
Species Group: | Mammals |
Factors:
Subject type: Mouse; Subject species: Mus musculus (Factor headings shown in green)
mb_sample_id | local_sample_id | AMY1 group | EXPERIMENT |
---|---|---|---|
SA041379 | S00020340 | - | - |
SA041380 | S00018946 | high | AMY1.3 |
SA041381 | S00018945 | high | AMY1.3 |
SA041382 | S00018948 | high | AMY1.3 |
SA041383 | S00018950 | high | AMY1.3 |
SA041384 | S00018952 | high | AMY1.3 |
SA041385 | S00018941 | high | AMY1.3 |
SA041386 | S00018932 | high | AMY1.3 |
SA041387 | S00018943 | high | AMY1.3 |
SA041388 | S00018939 | high | AMY1.3 |
SA041389 | S00018935 | high | AMY1.3 |
SA041390 | S00018937 | high | AMY1.3 |
SA041391 | S00018933 | high | AMY1.3 |
SA041392 | S00018962 | high | AMY1.4 |
SA041393 | S00018958 | high | AMY1.4 |
SA041394 | S00018960 | high | AMY1.4 |
SA041395 | S00018973 | high | AMY1.4 |
SA041396 | S00018968 | high | AMY1.4 |
SA041397 | S00018956 | high | AMY1.4 |
SA041398 | S00018972 | high | AMY1.4 |
SA041399 | S00018966 | high | AMY1.4 |
SA041400 | S00018970 | high | AMY1.4 |
SA041401 | S00018964 | high | AMY1.4 |
SA041402 | S00018953 | high | AMY1.4 |
SA041403 | S00018954 | high | AMY1.4 |
SA041404 | S00018940 | low | AMY1.3 |
SA041405 | S00018942 | low | AMY1.3 |
SA041406 | S00018938 | low | AMY1.3 |
SA041407 | S00018944 | low | AMY1.3 |
SA041408 | S00018936 | low | AMY1.3 |
SA041409 | S00018934 | low | AMY1.3 |
SA041410 | S00018947 | low | AMY1.3 |
SA041411 | S00018949 | low | AMY1.3 |
SA041412 | S00018951 | low | AMY1.3 |
SA041413 | S00018961 | low | AMY1.4 |
SA041414 | S00018959 | low | AMY1.4 |
SA041415 | S00018955 | low | AMY1.4 |
SA041416 | S00018971 | low | AMY1.4 |
SA041417 | S00018963 | low | AMY1.4 |
SA041418 | S00018957 | low | AMY1.4 |
SA041419 | S00018967 | low | AMY1.4 |
SA041420 | S00018969 | low | AMY1.4 |
SA041421 | S00018965 | low | AMY1.4 |
Showing results 1 to 43 of 43 |
Collection:
Collection ID: | CO000764 |
Collection Summary: | - |
Sample Type: | Intestine |
Treatment:
Treatment ID: | TR000784 |
Treatment Summary: | - |
Sample Preparation:
Sampleprep ID: | SP000777 |
Sampleprep Summary: | - |
Sampleprep Protocol Filename: | A007_-_Short_Chain_Fatty_Acids.pdf |
Combined analysis:
Analysis ID | AN001171 |
---|---|
Analysis type | MS |
Chromatography type | GC |
Chromatography system | Agilent 7890N |
Column | Agilent HP5-MS (15m × 0.25mm, 0.25 um) |
MS Type | EI |
MS instrument type | Single quadrupole |
MS instrument name | Agilent 5975 |
Ion Mode | POSITIVE |
Units | pmol/mg |
Chromatography:
Chromatography ID: | CH000823 |
Instrument Name: | Agilent 7890N |
Column Name: | Agilent HP5-MS (15m × 0.25mm, 0.25 um) |
Chromatography Type: | GC |
MS:
MS ID: | MS001066 |
Analysis ID: | AN001171 |
Instrument Name: | Agilent 5975 |
Instrument Type: | Single quadrupole |
MS Type: | EI |
Ion Mode: | POSITIVE |
Analysis Protocol File: | A007_-_Short_Chain_Fatty_Acids.pdf |