Summary of Study ST000747

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench,, where it has been assigned Project ID PR000538. The data can be accessed directly via it's Project DOI: 10.21228/M84687 This work is supported by NIH grant, U2C- DK119886.


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Study IDST000747
Study TitleMetabolomics of mice inoculated with human stool (part III).
Study TypeMS analysis
Study SummaryMice were inoculated with human stool samples from donors in a high gene copy number group or low gene copy number group. After several weeks, cecal contents were collected and frozen at -80. Aliquots were made on dry ice and then stored at -80 until shipment on dry ice. Analysis of short chain fatty acids (SCFA) of cecal content was performed.
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Phone(734) 232-8175
Submit Date2017-06-19
Num Groups56
Total Subjects43
Raw Data AvailableYes
Raw Data File Type(s)d
Analysis Type DetailGC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman application/zip

Select appropriate tab below to view additional metadata details:


Project ID:PR000538
Project DOI:doi: 10.21228/M84687
Project Title:Metabolomics of mice inoculated with human microbiota
Project Type:MS analysis
Project Summary:Metabolomics of mice inoculated with human microbiota
Institute:Cornell University
Laboratory:Ley Lab
Last Name:Ley
First Name:Ruth
Address:Ithaca, NY


Subject ID:SU000770
Subject Type:Mouse
Subject Species:Mus musculus
Taxonomy ID:10090
Species Group:Mammal


Subject type: Mouse; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id AMY1 group EXPERIMENT
SA041379S00020340- -
SA041380S00018946high AMY1.3
SA041381S00018945high AMY1.3
SA041382S00018948high AMY1.3
SA041383S00018950high AMY1.3
SA041384S00018952high AMY1.3
SA041385S00018941high AMY1.3
SA041386S00018932high AMY1.3
SA041387S00018943high AMY1.3
SA041388S00018939high AMY1.3
SA041389S00018935high AMY1.3
SA041390S00018937high AMY1.3
SA041391S00018933high AMY1.3
SA041392S00018962high AMY1.4
SA041393S00018958high AMY1.4
SA041394S00018960high AMY1.4
SA041395S00018973high AMY1.4
SA041396S00018968high AMY1.4
SA041397S00018956high AMY1.4
SA041398S00018972high AMY1.4
SA041399S00018966high AMY1.4
SA041400S00018970high AMY1.4
SA041401S00018964high AMY1.4
SA041402S00018953high AMY1.4
SA041403S00018954high AMY1.4
SA041404S00018940low AMY1.3
SA041405S00018942low AMY1.3
SA041406S00018938low AMY1.3
SA041407S00018944low AMY1.3
SA041408S00018936low AMY1.3
SA041409S00018934low AMY1.3
SA041410S00018947low AMY1.3
SA041411S00018949low AMY1.3
SA041412S00018951low AMY1.3
SA041413S00018961low AMY1.4
SA041414S00018959low AMY1.4
SA041415S00018955low AMY1.4
SA041416S00018971low AMY1.4
SA041417S00018963low AMY1.4
SA041418S00018957low AMY1.4
SA041419S00018967low AMY1.4
SA041420S00018969low AMY1.4
SA041421S00018965low AMY1.4
Showing results 1 to 43 of 43


Collection ID:CO000764
Collection Summary:-
Sample Type:Intestine


Treatment ID:TR000784
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000777
Sampleprep Summary:-
Sampleprep Protocol Filename:A007_-_Short_Chain_Fatty_Acids.pdf

Combined analysis:

Analysis ID AN001171
Analysis type MS
Chromatography type GC
Chromatography system Agilent 7890N
Column Agilent HP5-MS (15m × 0.25mm, 0.25 um)
MS Type EI
MS instrument type Single quadrupole
MS instrument name Agilent 5975
Units pmol/mg


Chromatography ID:CH000823
Instrument Name:Agilent 7890N
Column Name:Agilent HP5-MS (15m × 0.25mm, 0.25 um)
Chromatography Type:GC


MS ID:MS001066
Analysis ID:AN001171
Instrument Name:Agilent 5975
Instrument Type:Single quadrupole
MS Type:EI
Analysis Protocol File:A007_-_Short_Chain_Fatty_Acids.pdf