Summary of Study ST000748
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000539. The data can be accessed directly via it's Project DOI: 10.21228/M80H36 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST000748 |
Study Title | Placental cells (BeWo) phthalate exposure metabolomics |
Study Type | MS analysis |
Study Summary | BeWo cells were plated in 100mm x 20mm cell culture plates and allowed to attach and acclimate for 24 hours. Cell culture media was then replaced with media containing mono(2-ethylhexyl)phthalate (MEHP) at either 90 or 180 micromolar concentrations or vehicle control (DMSO, 0.05% by volume). Cells were exposed for 24 hours followed by collection of cell media which was flash frozen in liquid nitrogen and then placed on dry ice. Cells were washed with sodium acetate and then immediately flash frozen by addition of ~8mL of liquid nitrogen to tissue culture plate. All samples were stored at -80 degrees C. |
Institute | University of Michigan |
Department | Biomedical Research Core Facilities |
Laboratory | Metabolomics core |
Last Name | Kachman |
First Name | Maureen |
Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
mkachman@med.umich.edu | |
Phone | (734) 232-8175 |
Submit Date | 2017-06-19 |
Num Groups | 5 |
Total Subjects | 3 |
Raw Data Available | Yes |
Raw Data File Type(s) | d |
Analysis Type Detail | LC-MS |
Release Date | 2017-12-06 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000539 |
Project DOI: | doi: 10.21228/M80H36 |
Project Title: | Placental cells (BeWo cell line) exposure to phthalate esters |
Project Type: | MS analysis |
Project Summary: | Placental cells (BeWo cell line) were exposed to phthalate esters or vehicle control, metabolomics changes will investigated 24 hours post exposure |
Institute: | University of Michigan |
Department: | Environmental Health |
Laboratory: | Loch-Caruso Lab |
Last Name: | Loch-Caruso |
First Name: | Rita |
Address: | Ann Arbor, MI |
Email: | rlc@umich.edu |
Phone: | 734-936-1256 |
Subject:
Subject ID: | SU000771 |
Subject Type: | Human |
Subject Species: | Homo sapiens |
Taxonomy ID: | 9606 |
Species Group: | Mammals |
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
mb_sample_id | local_sample_id | MEHP concentration | Sample type |
---|---|---|---|
SA041428 | S00022590 | 180 | Cells |
SA041429 | S00022591 | 180 | Cells |
SA041430 | S00022592 | 180 | Cells |
SA041431 | S00022583 | 180 | Culture Media |
SA041432 | S00022582 | 180 | Culture Media |
SA041433 | S00022581 | 180 | Culture Media |
SA041434 | S00022589 | 90 | Cells |
SA041435 | S00022587 | 90 | Cells |
SA041436 | S00022588 | 90 | Cells |
SA041437 | S00022580 | 90 | Culture Media |
SA041438 | S00022579 | 90 | Culture Media |
SA041439 | S00022578 | 90 | Culture Media |
SA041422 | S00022586 | - | Cells |
SA041423 | S00022585 | - | Cells |
SA041424 | S00022584 | - | Cells |
SA041425 | S00022576 | - | Culture Media |
SA041426 | S00022575 | - | Culture Media |
SA041427 | S00022577 | - | Culture Media |
Showing results 1 to 18 of 18 |
Collection:
Collection ID: | CO000765 |
Collection Summary: | - |
Sample Type: | Cultured cells |
Treatment:
Treatment ID: | TR000785 |
Treatment Summary: | - |
Sample Preparation:
Sampleprep ID: | SP000778 |
Sampleprep Summary: | - |
Sampleprep Protocol Filename: | A003_-_Untargeted_Metabolomics.pdf |
Combined analysis:
Analysis ID | AN001172 | AN001173 |
---|---|---|
Analysis type | MS | MS |
Chromatography type | Reversed phase | Reversed phase |
Chromatography system | Agilent | Agilent |
Column | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
MS Type | ESI | ESI |
MS instrument type | QTOF | QTOF |
MS instrument name | Agilent 6530 QTOF | Agilent 6530 QTOF |
Ion Mode | NEGATIVE | POSITIVE |
Units | peak area | peak area |
Chromatography:
Chromatography ID: | CH000824 |
Instrument Name: | Agilent |
Column Name: | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
Chromatography Type: | Reversed phase |
MS:
MS ID: | MS001067 |
Analysis ID: | AN001172 |
Instrument Name: | Agilent 6530 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
Ion Mode: | NEGATIVE |
Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |
MS ID: | MS001068 |
Analysis ID: | AN001173 |
Instrument Name: | Agilent 6530 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
Ion Mode: | POSITIVE |
Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |