Summary of Study ST000776

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000562. The data can be accessed directly via it's Project DOI: 10.21228/M8196K This work is supported by NIH grant, U2C- DK119886.

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Study IDST000776
Study TitleFish Oil distal colon from rats
Study TypeMS analysis
Study SummaryFish Oil distal colon from rats.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-05
Num Groups2
Total Subjects12
Raw Data AvailableYes
Raw Data File Type(s)wiff
Analysis Type DetailLC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8196K
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000562
Project DOI:doi: 10.21228/M8196K
Project Title:Pilot Grant Award
Project Type:MS analysis
Project Summary:16 samples from lipodomics
Institute:University of Michigan
Department:Family Medicine
Laboratory:Djuric Lab
Last Name:Djuric
First Name:Zora
Address:Ann Arbor, MI
Email:zoralogn@umich.edu
Phone:734-615-6210

Subject:

Subject ID:SU000799
Subject Type:Rat
Subject Species:Rattus norvegicus
Taxonomy ID:10116
Species Group:Mammal

Factors:

Subject type: Rat; Subject species: Rattus norvegicus (Factor headings shown in green)

mb_sample_id local_sample_id Fish Oil Tumor
SA042351S00021491NO NO
SA042352S00021489NO NO
SA042353S00021490NO NO
SA042354S00021496NO YES
SA042355S00021495NO YES
SA042356S00021497NO YES
SA042357S00021486YES NO
SA042358S00021488YES NO
SA042359S00021487YES NO
SA042360S00021492YES YES
SA042361S00021493YES YES
SA042362S00021494YES YES
Showing results 1 to 12 of 12

Collection:

Collection ID:CO000793
Collection Summary:-
Sample Type:Colon

Treatment:

Treatment ID:TR000813
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000806
Sampleprep Summary:-
Sampleprep Protocol Filename:A004_-_Shotgun_Lipidomics.pdf

Combined analysis:

Analysis ID AN001226 AN001227
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Shimadzu CTO-20A Nexera X2 Shimadzu CTO-20A Nexera X2
Column Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
MS Type ESI ESI
MS instrument type Triple TOF Triple TOF
MS instrument name ABI Sciex 5600+ TripleTOF ABI Sciex 5600+ TripleTOF
Ion Mode NEGATIVE POSITIVE
Units peak area normalized peak area normalized

Chromatography:

Chromatography ID:CH000860
Instrument Name:Shimadzu CTO-20A Nexera X2
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Column Temperature:55
Flow Rate:0.400uL/min
Solvent A:40% acetonitrile/60% water; 10 mM ammonium acetate
Solvent B:10% acetonitrile/5% water/85% isopropanol; 10 mM ammonium acetate
Chromatography Type:Reversed phase

MS:

MS ID:MS001121
Analysis ID:AN001226
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
  
MS ID:MS001122
Analysis ID:AN001227
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:POSITIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
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