Summary of Study ST000781

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000567. The data can be accessed directly via it's Project DOI: 10.21228/M8CM28 This work is supported by NIH grant, U2C- DK119886.

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Study IDST000781
Study TitleRabbit Plasma Lipidomics with high fat diet and treatment
Study TypeMS analysis
Study SummaryPlasma of rabbits fed high fat diet with and with out lipitor over 20 weeks
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-05
Num Groups4
Total Subjects59
Raw Data AvailableYes
Raw Data File Type(s)wiff
Analysis Type DetailLC-MS
Release Date2020-03-03
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8CM28
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR000567
Project DOI:doi: 10.21228/M8CM28
Project Title:Rabbit Plasma Lipidomics Studies
Project Type:MS analysis
Project Summary:Plasma lipidomics
Institute:University of Michigan
Department:UMich Internal Medicine
Laboratory:Pennathur Lab
Last Name:Pennathur
First Name:Subramaniam
Address:University Michigan, 2900 Huron Parkway, Ann Arbor, MI 48105
Email:spennath@umich.edu
Phone:734 615 5757

Subject:

Subject ID:SU000804
Subject Type:Animal
Subject Species:Oryctolagus cuniculus
Taxonomy ID:9986
Species Group:Mammal

Factors:

Subject type: Animal; Subject species: Oryctolagus cuniculus (Factor headings shown in green)

mb_sample_id local_sample_id lipitor visit
SA042446S00015620NO 1 week
SA042447S00015612NO 1 week
SA042448S00015631NO 1 week
SA042449S00015669NO 1 week
SA042450S00015618NO 1 week
SA042451S00015619NO 1 week
SA042452S00015613NO 1 week
SA042453S00015614NO 1 week
SA042454S00015615NO 1 week
SA042455S00015617NO 1 week
SA042456S00015616NO 1 week
SA042457S00015650NO 20 weeks
SA042458S00015670NO 20 weeks
SA042459S00015651NO 20 weeks
SA042460S00015655NO 20 weeks
SA042461S00015657NO 20 weeks
SA042462S00015658NO 20 weeks
SA042463S00015652NO 20 weeks
SA042464S00015656NO 20 weeks
SA042465S00015654NO 20 weeks
SA042466S00015653NO 20 weeks
SA042467S00015638NO 8 weeks
SA042468S00015639NO 8 weeks
SA042469S00015637NO 8 weeks
SA042470S00015636NO 8 weeks
SA042471S00015633NO 8 weeks
SA042472S00015634NO 8 weeks
SA042473S00015632NO 8 weeks
SA042474S00015635NO 8 weeks
SA042475S00015622YES 1 week
SA042476S00015623YES 1 week
SA042477S00015628YES 1 week
SA042478S00015621YES 1 week
SA042479S00015629YES 1 week
SA042480S00015625YES 1 week
SA042481S00015630YES 1 week
SA042482S00015627YES 1 week
SA042483S00015626YES 1 week
SA042484S00015624YES 1 week
SA042485S00015659YES 20 weeks
SA042486S00015661YES 20 weeks
SA042487S00015660YES 20 weeks
SA042488S00015663YES 20 weeks
SA042489S00015667YES 20 weeks
SA042490S00015668YES 20 weeks
SA042491S00015666YES 20 weeks
SA042492S00015665YES 20 weeks
SA042493S00015664YES 20 weeks
SA042494S00015662YES 20 weeks
SA042495S00015641YES 8 weeks
SA042496S00015643YES 8 weeks
SA042497S00015642YES 8 weeks
SA042498S00015640YES 8 weeks
SA042499S00015644YES 8 weeks
SA042500S00015645YES 8 weeks
SA042501S00015648YES 8 weeks
SA042502S00015647YES 8 weeks
SA042503S00015646YES 8 weeks
SA042504S00015649YES 8 weeks
Showing results 1 to 59 of 59

Collection:

Collection ID:CO000798
Collection Summary:-
Sample Type:Blood

Treatment:

Treatment ID:TR000818
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000811
Sampleprep Summary:-
Sampleprep Protocol Filename:A004_-_Shotgun_Lipidomics.pdf

Combined analysis:

Analysis ID AN001236 AN001237
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Shimadzu CTO-20A Nexera X2 Shimadzu CTO-20A Nexera X2
Column Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
MS Type ESI ESI
MS instrument type Triple TOF Triple TOF
MS instrument name ABI Sciex 5600+ TripleTOF ABI Sciex 5600+ TripleTOF
Ion Mode NEGATIVE POSITIVE
Units peak area normalized peak area normalized

Chromatography:

Chromatography ID:CH000865
Instrument Name:Shimadzu CTO-20A Nexera X2
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Column Temperature:55
Flow Rate:0.400uL/min
Solvent A:40% acetonitrile/60% water; 10 mM ammonium acetate
Solvent B:10% acetonitrile/5% water/85% isopropanol; 10 mM ammonium acetate
Chromatography Type:Reversed phase

MS:

MS ID:MS001131
Analysis ID:AN001236
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
  
MS ID:MS001132
Analysis ID:AN001237
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:POSITIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
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