Summary of Study ST000816

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000581. The data can be accessed directly via it's Project DOI: 10.21228/M8K39M This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST000816
Study TitleLipidomics of Chronic Kidney Disease progression
Study TypeMS analysis
Study SummaryAnalysis of blood plasma lipid composition in patients with diabetic kidney disease In this untargeted lipidomics study we are comparing the lipidomics profile of progressors versus nonprogressors. A subgroup of patients have a follow up samples and therefore their baseline data are comared to the follow up visit data.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-07-13
Num Groups5
Total Subjects80
Raw Data AvailableYes
Raw Data File Type(s)wiff
Analysis Type DetailLC-MS
Release Date2018-02-07
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8K39M
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000581
Project DOI:doi: 10.21228/M8K39M
Project Title:Diabetes and Chronic Kidney Disease progression
Project Type:MS analysis
Project Summary:Metabolomics of Chronic Kidney Disease progression
Institute:University of Michigan
Department:UMich Internal Medicine
Laboratory:Pennathur Lab
Last Name:Pennathur
First Name:Subramaniam
Address:University Michigan, 2900 Huron Parkway, Ann Arbor, MI 48105
Email:spennath@umich.edu
Phone:734 615 5757

Subject:

Subject ID:SU000842
Subject Type:HUMAN
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: HUMAN; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Progressors Visit
SA045194S00018013Non-progressor Baseline
SA045195S00018009Non-progressor Baseline
SA045196S00017997Non-progressor Baseline
SA045197S00017993Non-progressor Baseline
SA045198S00018001Non-progressor Baseline
SA045199S00018005Non-progressor Baseline
SA045200S00017989Non-progressor Baseline
SA045201S00017985Non-progressor Baseline
SA045202S00018021Non-progressor Baseline
SA045203S00018017Non-progressor Baseline
SA045204S00018002Non-progressor Followup
SA045205S00018006Non-progressor Followup
SA045206S00018022Non-progressor Followup
SA045207S00018010Non-progressor Followup
SA045208S00018018Non-progressor Followup
SA045209S00017990Non-progressor Followup
SA045210S00017986Non-progressor Followup
SA045211S00018014Non-progressor Followup
SA045212S00017994Non-progressor Followup
SA045213S00017998Non-progressor Followup
SA045214S00018051Non-progressor NA
SA045215S00018053Non-progressor NA
SA045216S00018047Non-progressor NA
SA045217S00018039Non-progressor NA
SA045218S00018037Non-progressor NA
SA045219S00018041Non-progressor NA
SA045220S00018043Non-progressor NA
SA045221S00018055Non-progressor NA
SA045222S00018045Non-progressor NA
SA045223S00018049Non-progressor NA
SA045224S00018065Non-progressor NA
SA045225S00018075Non-progressor NA
SA045226S00018073Non-progressor NA
SA045227S00018077Non-progressor NA
SA045228S00018079Non-progressor NA
SA045229S00018083Non-progressor NA
SA045230S00018081Non-progressor NA
SA045231S00018071Non-progressor NA
SA045232S00018069Non-progressor NA
SA045233S00018061Non-progressor NA
SA045234S00018059Non-progressor NA
SA045235S00018063Non-progressor NA
SA045236S00018033Non-progressor NA
SA045237S00018067Non-progressor NA
SA045238S00018057Non-progressor NA
SA045239S00018035Non-progressor NA
SA045240S00018025Non-progressor NA
SA045241S00018029Non-progressor NA
SA045242S00018027Non-progressor NA
SA045243S00018031Non-progressor NA
SA045244S00017995Progressor Baseline
SA045245S00018015Progressor Baseline
SA045246S00018023Progressor Baseline
SA045247S00018019Progressor Baseline
SA045248S00018007Progressor Baseline
SA045249S00018003Progressor Baseline
SA045250S00017999Progressor Baseline
SA045251S00017987Progressor Baseline
SA045252S00017991Progressor Baseline
SA045253S00018011Progressor Baseline
SA045254S00018004Progressor Followup
SA045255S00018016Progressor Followup
SA045256S00018008Progressor Followup
SA045257S00018012Progressor Followup
SA045258S00018000Progressor Followup
SA045259S00017996Progressor Followup
SA045260S00018024Progressor Followup
SA045261S00017992Progressor Followup
SA045262S00017988Progressor Followup
SA045263S00018020Progressor Followup
SA045264S00018080Progressor NA
SA045265S00018082Progressor NA
SA045266S00018084Progressor NA
SA045267S00018068Progressor NA
SA045268S00018070Progressor NA
SA045269S00018074Progressor NA
SA045270S00018072Progressor NA
SA045271S00018066Progressor NA
SA045272S00018076Progressor NA
SA045273S00018078Progressor NA
SA045274S00018058Progressor NA
SA045275S00018040Progressor NA
SA045276S00018042Progressor NA
SA045277S00018026Progressor NA
SA045278S00018028Progressor NA
SA045279S00018038Progressor NA
SA045280S00018034Progressor NA
SA045281S00018030Progressor NA
SA045282S00018036Progressor NA
SA045283S00018044Progressor NA
SA045284S00018046Progressor NA
SA045285S00018032Progressor NA
SA045286S00018060Progressor NA
SA045287S00018062Progressor NA
SA045288S00018056Progressor NA
SA045289S00018054Progressor NA
SA045290S00018048Progressor NA
SA045291S00018050Progressor NA
SA045292S00018052Progressor NA
SA045293S00018064Progressor NA
Showing results 1 to 100 of 100

Collection:

Collection ID:CO000836
Collection Summary:-
Sample Type:Blood

Treatment:

Treatment ID:TR000856
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000849
Sampleprep Summary:-
Sampleprep Protocol Filename:A004_-_Shotgun_Lipidomics.pdf

Combined analysis:

Analysis ID AN001293 AN001294
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Shimadzu CTO-20A Nexera X2 Shimadzu CTO-20A Nexera X2
Column Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
MS Type ESI ESI
MS instrument type Triple TOF Triple TOF
MS instrument name ABI Sciex 5600+ TripleTOF ABI Sciex 5600+ TripleTOF
Ion Mode NEGATIVE POSITIVE
Units peak area peak area

Chromatography:

Chromatography ID:CH000906
Instrument Name:Shimadzu CTO-20A Nexera X2
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Column Temperature:55
Flow Rate:0.400uL/min
Solvent A:40% acetonitrile/60% water; 10 mM ammonium acetate
Solvent B:10% acetonitrile/5% water/85% isopropanol; 10 mM ammonium acetate
Chromatography Type:Reversed phase

MS:

MS ID:MS001186
Analysis ID:AN001293
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
  
MS ID:MS001187
Analysis ID:AN001294
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:POSITIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
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