Summary of Study ST000951
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000653. The data can be accessed directly via it's Project DOI: 10.21228/M88D75 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
Study ID | ST000951 |
Study Title | Human NK vs T cell metabolism using 13C-Glucose tracer with/out oligomycin (part III) |
Study Type | isotope tracer |
Study Summary | NK versus CD8 T naïve and CD8 T memory SIRM experiment using 13C-Glucose tracer with/out oligomycin |
Institute | University of Kentucky |
Department | Markey Cancer Center |
Last Name | Presnell |
First Name | Steve |
Address | Dept Of Pathology, UKMC |
srpres2@uky.edu | |
Phone | 000-000-0000 |
Submit Date | 2018-04-13 |
Study Comments | For additional comments about the study, like listing a publication. |
Raw Data Available | Yes |
Raw Data File Type(s) | raw(Thermo) |
Analysis Type Detail | GC-MS |
Release Date | 2019-05-15 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000653 |
Project DOI: | doi: 10.21228/M88D75 |
Project Title: | NK versus CD8 T naïve and CD8 T memory |
Project Summary: | Exp to look at lactate/ alanine excreted in supernatant, lactate, citrulline and other TCA intermediates inside cells |
Institute: | University of Kentucky |
Department: | Markey Cancer Center |
Last Name: | Lutz |
First Name: | Charlie |
Address: | Dept Of Pathology, UKMC |
Email: | ctlutz2@uky.edu |
Phone: | 000-000-0000 |
Subject:
Subject ID: | SU000990 |
Subject Type: | Animal |
Subject Species: | Homo sapiens |
Taxonomy ID: | 9606 |
Species Group: | Mammals |
Factors:
Subject type: Animal; Subject species: Homo sapiens (Factor headings shown in green)
mb_sample_id | local_sample_id | cell_type |
---|---|---|
SA057116 | 20150818_T_memory_plate8 | CD8_T_memory |
SA057117 | 20150818_T_memory_plate7 | CD8_T_memory |
SA057118 | 20150818_T_memory_plate9 | CD8_T_memory |
SA057119 | 20150818_T_memory_plate10 | CD8_T_memory |
SA057120 | 20150818_T_naive_plate5 | CD8_T_naive |
SA057121 | 20150818_T_naive_plate6 | CD8_T_naive |
SA057122 | 20150818_T_naive_plate4 | CD8_T_naive |
SA057123 | 20150818_T_naive_plate3 | CD8_T_naive |
SA057124 | 20150818_NK_plate2 | NK |
SA057125 | 20150818_NK_plate1 | NK |
Showing results 1 to 10 of 10 |
Collection:
Collection ID: | CO000984 |
Collection Summary: | Blood collected from a draw. Collection and quench of cells in tissue culture Media is extracted from plate. |
Collection Protocol ID: | blood_collection cell_quench_collection cells_media |
Collection Protocol Filename: | WS_Fan_Quench_cell_tissue.pdf |
Sample Type: | T-Cells |
Treatment:
Treatment ID: | TR001004 |
Treatment Summary: | Normal human, no treatment. Grown in unlabeled glucose. Grown in labeled glucose. Grown in unlabeled glucose and treated with oligomycin. Grown in labeled glucose and treated with oligomycin. |
Treatment Protocol ID: | normal normal_12CGlc normal_13CGlc oligomycin_12CGlc oligomycin_13CGlc |
Sample Preparation:
Sampleprep ID: | SP000997 |
Sampleprep Summary: | Cells of interest extracted from the blood. Polar extraction from cells. |
Sampleprep Protocol ID: | cell_extraction polar_extraction |
Sampleprep Protocol Filename: | WS_Fan_Extract_Polar_Lipid_Prot.pdf |
Combined analysis:
Analysis ID | AN001560 |
---|---|
Analysis type | MS |
Chromatography type | GC |
Chromatography system | GC-EI-MS, Thermo ITQ |
Column | SGE 0.15 mm i.d. x 50 m fused silica open-tubular column, coated with 0.25 μm BPX-5 (5% phenylmethyl- phenylsiloxane) |
MS Type | EI |
MS instrument type | GC-ITQ |
MS instrument name | Thermo ITQ |
Ion Mode | POSITIVE |
Units | normalized peak area |
Chromatography:
Chromatography ID: | CH001094 |
Chromatography Summary: | Targeted GC |
Instrument Name: | GC-EI-MS, Thermo ITQ |
Column Name: | SGE 0.15 mm i.d. x 50 m fused silica open-tubular column, coated with 0.25 μm BPX-5 (5% phenylmethyl- phenylsiloxane) |
Chromatography Type: | GC |
MS:
MS ID: | MS001438 |
Analysis ID: | AN001560 |
Instrument Name: | Thermo ITQ |
Instrument Type: | GC-ITQ |
MS Type: | EI |
MS Comments: | GCMS Analytical Experiment with detection of compounds by comparison to standards. Derivitization is done with MTBSTFA (N-methyl-N-[tert-butyldimethylsilyl]trifluoroacetamide). |
Ion Mode: | POSITIVE |