Summary of Study ST000992

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000673. The data can be accessed directly via it's Project DOI: 10.21228/M8PD7W This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST000992
Study TitleMetabolomic Markers of Dietary Patterns in the Costa Rica Study
Study TypeMS analysis
Study SummaryThe study will examine associations between dietary patterns and the metabolome on a random subset (n=80) of control subjects in a population-based case-control study of myocardial infarction in Costa Rican adults. Each sample will undergo complementary LC-MS-based approaches, specifically untargeted metabolite profiling and targeted lipidomic profiling. Subsequently we will test for associations between 1) previously derived dietary patterns and plasma molecular features and 2) the top plasma correlates of dietary patterns and metabolic syndrome.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2018-06-25
Num Groups5
Total Subjects79
Raw Data AvailableYes
Raw Data File Type(s)wiff
Analysis Type DetailLC-MS
Release Date2018-08-27
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8PD7W
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000673
Project DOI:doi: 10.21228/M8PD7W
Project Title:Costa Rica Study
Project Type:MS analysis
Project Summary:Large-scale case-control study of myocardial infarction
Institute:University of Alabama, Birmingham
Department:Epidemiology
Laboratory:Aslibekyan, Stella Lab
Last Name:Aslibekyan
First Name:Stella
Address:Birmingham, AL
Email:stella7@gmail.com
Phone:205-975-9108

Subject:

Subject ID:SU001031
Subject Type:HUMAN
Subject Species:Homo sapiens
Taxonomy ID:9606

Factors:

Subject type: HUMAN; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Gender Metabolic syndrome Smoker
SA061447S00019056Female No No
SA061448S00019019Female No No
SA061449S00019061Female No No
SA061450S00019055Female No No
SA061451S00019066Female No No
SA061452S00019025Female No No
SA061453S00019046Female No No
SA061454S00019048Female No No
SA061455S00019053Female No No
SA061456S00019010Female No No
SA061457S00019059Female No No
SA061458S00019000Female No No
SA061459S00019070Female No No
SA061460S00019074Female No No
SA061461S00019041Female Yes No
SA061462S00019063Female Yes No
SA061463S00019078Female Yes No
SA061464S00019052Male No No
SA061465S00019049Male No No
SA061466S00019051Male No No
SA061467S00019044Male No No
SA061468S00019040Male No No
SA061469S00019042Male No No
SA061470S00019043Male No No
SA061471S00019077Male No No
SA061472S00019047Male No No
SA061473S00019076Male No No
SA061474S00019064Male No No
SA061475S00019065Male No No
SA061476S00019069Male No No
SA061477S00019067Male No No
SA061478S00018999Male No No
SA061479S00019071Male No No
SA061480S00019068Male No No
SA061481S00019073Male No No
SA061482S00019057Male No No
SA061483S00019058Male No No
SA061484S00019054Male No No
SA061485S00019039Male No No
SA061486S00019014Male No No
SA061487S00019013Male No No
SA061488S00019016Male No No
SA061489S00019017Male No No
SA061490S00019022Male No No
SA061491S00019038Male No No
SA061492S00019011Male No No
SA061493S00019009Male No No
SA061494S00019002Male No No
SA061495S00019001Male No No
SA061496S00019003Male No No
SA061497S00019004Male No No
SA061498S00019007Male No No
SA061499S00019006Male No No
SA061500S00019023Male No No
SA061501S00019018Male No No
SA061502S00019030Male No No
SA061503S00019024Male No No
SA061504S00019031Male No No
SA061505S00019032Male No No
SA061506S00019028Male No No
SA061507S00019034Male No No
SA061508S00019027Male No No
SA061509S00019037Male No No
SA061510S00019026Male No No
SA061511S00019036Male No No
SA061512S00019045Male No Yes
SA061513S00019075Male No Yes
SA061514S00019005Male No Yes
SA061515S00019072Male No Yes
SA061516S00019012Male No Yes
SA061517S00019020Male No Yes
SA061518S00019015Male No Yes
SA061519S00019029Male No Yes
SA061520S00019008Male No Yes
SA061521S00019050Male No Yes
SA061522S00019060Male Yes No
SA061523S00019035Male Yes No
SA061524S00019033Male Yes No
SA061525S00019062Male Yes Yes
Showing results 1 to 79 of 79

Collection:

Collection ID:CO001025
Collection Summary:-
Sample Type:Blood (plasma)

Treatment:

Treatment ID:TR001045
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP001038
Sampleprep Summary:-
Sampleprep Protocol Filename:Untargeted_metabolomics_analysis.doc

Combined analysis:

Analysis ID AN001618 AN001619 AN001620 AN001621
Analysis type MS MS MS MS
Chromatography type Reversed phase Reversed phase Reversed phase Reversed phase
Chromatography system Agilent 6530 Agilent 6530 Shimadzu CTO-20A Nexera X2 Shimadzu CTO-20A Nexera X2
Column Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
MS Type ESI ESI ESI ESI
MS instrument type QTOF QTOF Triple TOF Triple TOF
MS instrument name Agilent 6530 QTOF Agilent 6530 QTOF ABI Sciex 5600+ TripleTOF ABI Sciex 5600+ TripleTOF
Ion Mode NEGATIVE POSITIVE NEGATIVE POSITIVE
Units counts - Counts Counts

Chromatography:

Chromatography ID:CH001140
Methods Filename:RP_Neg_Untargeted_440_modified.zip
Instrument Name:Agilent 6530
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Chromatography Type:Reversed phase
  
Chromatography ID:CH001141
Methods Filename:LIP_15min_MSMS_Jenny_new_20min_Positive.zip
Instrument Name:Shimadzu CTO-20A Nexera X2
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Chromatography Type:Reversed phase

MS:

MS ID:MS001496
Analysis ID:AN001618
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:NEGATIVE
Acquisition Parameters File:RP_Neg_Untargeted_440_modified.zip
Analysis Protocol File:Untargeted_metabolomics_analysis.doc
  
MS ID:MS001497
Analysis ID:AN001619
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:POSITIVE
Acquisition Parameters File:RP_Pos_Untargeted_440.zip
Analysis Protocol File:Untargeted_metabolomics_analysis.doc
  
MS ID:MS001498
Analysis ID:AN001620
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:NEGATIVE
Acquisition Parameters File:LIP_15min_MSMS_Jenny_New_20min_Negative.zip
Analysis Protocol File:Shotgun_lipidomics_analysis.doc
  
MS ID:MS001499
Analysis ID:AN001621
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:POSITIVE
Acquisition Parameters File:LIP_15min_MSMS_Jenny_new_20min_Positive.zip
Analysis Protocol File:Shotgun_lipidomics_analysis.doc
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